Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04779 ATGTCGAGCGAAAGGAAAGGCAAAGGTCGCCAAAAGATTCAAATGAAAAAGATGAGTAACGAGAGCAACCTACAGGTGACTTTCTCAAAGCGTCGCAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGTACCCTTTGTGGTGTTGATGTTGCACTCGTTGTATTCTCACCTAGTGAGAAGGTATTTTCCTTTGGTCACCCTAATATTGATACAGTCATAGACCGCTATCTCTCTCAAGTCCCACTCCAAACCACCGCCACCATGCAATTTGTTGAGGCTCACCGCAACGCCAACTTGTGTGAGCTCAATGCTCAATTAACTGAAATCAACAACAAGCTGGACGATGAGAAGAAGCGCAATGATGAGTTGAGCCTTTTGCGCAAGGCGATTGAGGATCAATTTTGGTGGGCTTGTCCAATTGATGGGATGAATAGGGCTGAACTTGAATTCCTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTTGCACAACATGTTAATGGGCTTACAATTCAGGGTGCTCCTACTCAAGCGTTTCCATTTTTTGTTGGAAATGCTTCGTCCTCTAACATCCCTCTCTATCATCAAGCGCTTCCACCACAAGTTTCTCAAAACCCTATGTTGGAGCCTCATTTATTTGGCTTCAACAATATTGTGCCAGCCATGTCGAGTGGAAGGAAAGGCAAAGGTCGCAAAAAGATCGAGATGAAAAAGATAAGCAACGAAAGCAACCTGCAAGTTATATTTTCGAAACGTCGTGGCGGACTCTTCAAGAAAGTCAATGAATTTTGCACACTTTGTGGTGTAGATGTTGCTCTCATTGTATTCTCACCTAGTGGGAAAGCTTTTTTTGTCATCCCAATGTTGATAAAGTCATAG 879 0.4357 MSSERKGKGRQKIQMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSEKVFSFGHPNIDTVIDRYLSQVPLQTTATMQFVEAHRNANLCELNAQLTEINNKLDDEKKRNDELSLLRKAIEDQFWWACPIDGMNRAELEFLKKALEELKKLVAQHVNGLTIQGAPTQAFPFFVGNASSSNIPLYHQALPPQVSQNPMLEPHLFGFNNIVPAMSSGRKGKGRKKIEMKKISNESNLQVIFSKRRGGLFKKVNEFCTLCGVDVALIVFSPSGKAFFVIPMLIKS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04779 292 SUPERFAMILY SRF-like 230 286 IPR036879 GO:0003677|GO:0046983
Tsu01g04779 292 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g04779 292 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 PANTHER MADS BOX PROTEIN 7 181 - -
Tsu01g04779 292 PANTHER MADS BOX PROTEIN 228 283 - -
Tsu01g04779 292 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Tsu01g04779 292 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tsu01g04779 292 Gene3D - 241 285 IPR036879 GO:0003677|GO:0046983
Tsu01g04779 292 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu01g04779 292 Gene3D - 88 174 - -
Tsu01g04779 292 Coils Coil 106 133 - -
Tsu01g04779 292 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 SMART madsneu2 229 288 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 Coils Coil 148 168 - -
Tsu01g04779 292 CDD MADS 230 283 - -
Tsu01g04779 292 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
Tsu01g04779 292 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 228 283 - -
Tsu01g04779 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 238 283 IPR002100 GO:0003677|GO:0046983
Tsu01g04779 292 ProSiteProfiles MADS-box domain profile. 229 283 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04779 Tsu-Chr1 54913563 54915410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04779 226 283 Type I MADS-box Gene Family AT5G60440 68.966 1.10e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g04779 SRF-TF 6.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04779 - - mtr:MTR_1g105905 278.87