Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04777 ATGGGTACCAAGGCAAAGAAAGCTATGaagaaaagtttgaaaaaggtcAATGCTATTAAACCATCTGAAAGTGCTGATTTTTTGCCGTTGGAAGGTGGTCCTGGTCGCAAACTTCCTGTACTCAAGCCATTGGAGAACACTTCCCCTGTTTTGTATATTGGTAGGATTCCACATGGGTTCTATGAGAAGGAGATGGAAGCttattttggacaatttggtACCATCAAGAGATTGAGAATTGCCAGAAATAAAAAGACCGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTTCGTGGTACCTTTAGAACATGTTCATCCCAGATTATGGAAAGGATTCAATTATCGTTACAAACCCGTGGACTCTCTCCAAATTGAACGAGAGCGACATGACAAGGAAAGAACAATCGAAGAACACAGAAAGTTGGTTGATAGGGTTATGAAACGTGACAAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAGTGTCCTGAGATTGTCGGTAACCTCCAGCCTGCTCCAAAGAAGATAAAGTTCGACGAAGATTGA 633 0.3855 MGTKAKKAMKKSLKKVNAIKPSESADFLPLEGGPGRKLPVLKPLENTSPVLYIGRIPHGFYEKEMEAYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPLEHVHPRLWKGFNYRYKPVDSLQIERERHDKERTIEEHRKLVDRVMKRDKKRRKRIEAAGIDYECPEIVGNLQPAPKKIKFDED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04777 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Tsu01g04777 210 CDD RRM_NIFK_like 50 122 - -
Tsu01g04777 210 Gene3D - 3 123 IPR012677 -
Tsu01g04777 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 122 IPR000504 GO:0003723
Tsu01g04777 210 SMART rrm1_1 50 123 IPR000504 GO:0003723
Tsu01g04777 210 SUPERFAMILY RNA-binding domain, RBD 50 194 IPR035979 GO:0003676
Tsu01g04777 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 210 - -
Tsu01g04777 210 PANTHER - 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04777 Tsu-Chr1 54894412 54897189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04777 51 122 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 8.40e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04777 K14838 - gmx:100778780 330.487