Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g04764 | ATGGCCAGGACAGGGTTGATGATTTCTAGTCTTCTACTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTACTATAATCAGAAAAGATGCGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTATTTTGAACGGGTCTTGACTTACTTTAATGGTGAATGCCCACCTCCTCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTATTGGATCAGGCCATCTATTACCATCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTACTGCACCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTCACAGAGTTGTCTGGGGActtcaaaatccattttcatGATCGCCAAGGAGATTTTTATTGTTGGTTGAACACAACCATGACAGAAAACAGGAAAGTTTTGAACACCAGCGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCAGGTTGAGGTTGTGCTGGTGGATCATAATGGCAATGTTGTAGCTTCCAAACCTGAAATTACAAAGAAATCCGATGAGAGTTCAAGTACCAATCCTGCCCCAGTTGAGGCGAGCAACCCCGCATCAAATGCAGACAAAGAGTCAGGGGATGGAGATCAGGACAAGGACGACGTATTTTCAGATGGTGAGGCAGAGCATCCTGCTTCTTCAAGAAGCAAGCAAACAAAGGCACCTTCTGAAGCAGTTGAAACAGTTGCAAGTGCCACCAAAGAGTCTGAGgcaaacaaaatttcaaatcaaatcacaaataTAACACATGCAACAGAACAAGTTTCTTTGGGTAGTAAGATCTCTACACCAAGTCAAAGTACTGGTGAGCCAAAAAGTGATGTTGGTGGAAGAACAGTGTCCAGTCTCGACGGGCCTAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACATTCGGAGACGATGAAGACTATGAAAGTGATTGA | 1059 | 0.424 | MARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISDHSGVLFSTKKHPRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFQVEVVLVDHNGNVVASKPEITKKSDESSSTNPAPVEASNPASNADKESGDGDQDKDDVFSDGEAEHPASSRSKQTKAPSEAVETVASATKESEANKISNQITNITHATEQVSLGSKISTPSQSTGEPKSDVGGRTVSSLDGPSSESEFKAMAADASVFTFGDDEDYESD | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04764 | 352 | MobiDBLite | consensus disorder prediction | 230 | 253 | - | - | |
| Tsu01g04764 | 352 | Gene3D | - | 87 | 193 | - | - | |
| Tsu01g04764 | 352 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 3 | 55 | IPR029021 | - | |
| Tsu01g04764 | 352 | MobiDBLite | consensus disorder prediction | 254 | 327 | - | - | |
| Tsu01g04764 | 352 | ProSiteProfiles | C2 tensin-type domain profile. | 65 | 192 | IPR014020 | - | |
| Tsu01g04764 | 352 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 352 | - | - | |
| Tsu01g04764 | 352 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
| Tsu01g04764 | 352 | Gene3D | Protein tyrosine phosphatase superfamily | 1 | 61 | IPR029021 | - | |
| Tsu01g04764 | 352 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 135 | 189 | IPR035892 | - | |
| Tsu01g04764 | 352 | SMART | PTEN_C2_2 | 63 | 191 | IPR014020 | - | |
| Tsu01g04764 | 352 | MobiDBLite | consensus disorder prediction | 199 | 331 | - | - | |
| Tsu01g04764 | 352 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 1 | 352 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g04764 | Tsu-Chr1 | 54785399 | 54787721 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04764 | 1 | 352 | Protein tyrosine phosphatase (PTP) family | AT3G19420 | 64.722 | 7.75e-159 | 457 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g04764 | K01110 | - | gmx:100784003 | 599.356 |