Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04763 ATGGCAATCcatcatcaccatcaccatCACAATCAAAACGTTtcatctcttcttcttgatGCTCTTTACTGTGATGAAGAAAAATGggaagaagaacaagaacatGATGATGTAGAAGATGATTTATCATCTGAACAAAGTGATGTTACAACAAACAATGATATCTTTGACTCTACTTCCCTTTTTCCTTTACTTTTGTTAGAACAAGATTTGTtcaatgaagatgaagaacttaACACACTTTTCATCAAAGAAAAAACTCATTATGAAGAAGATCTAAAAAAtgtgaagatgatgaattttgATGACTCACTTTCTCAACCACGTCGTGAAGCAGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTTCTCTCACTGCAACACTTGCTGTTACTTACTTTGATAGATTCATTCTAAGCTTCCATTTTCAAAAAGATAAACCATGGATGTTACAACTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAgTGCAAGAtactaaatatgtttttgaagcaaaaactaTTCAGAGAATGGAGCTTTTGATTCTTTCAACACTAAAATGGAAGATGCATCCTGTAACACCACACTCATTTCTAGATCACATTATAAGAAGGTTTGGATTGAAAACTAATCTTCACTGGGAGTTTCTAAGGCGTTGTGAAAATCTTCTTCTATCAGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCATCTGTGTTGGCCACTGCTACAATGCTGCATGTTATAGATCAGATTGAACAGAGTGATGATGGTGTGGACTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGgagAAAGTTGATGAATGTTATAATTTGATTCTGCAAGTTACAAATGcaaattataatgatgattattattatggtaataataataataaaagaaagtatGAACAAATCCCTGGTAGTCCAAGTGGCGTAATTGATGCTGTATTTAGTTCTGATGGTTCCAACGATTCATGGACAGTGGGGTCATCAACATATTCAACATCCTCAGAGCCTGTGTTTAAGAAGACCAAAACTCAAGGACAAAATGTTAATTTGTCACCTCTTAACAGGGTTATTGTCGGAATTCTTGCCACTGCAACAACCTCTCCTTAA 1185 0.3055 MAIHHHHHHHNQNVSSLLLDALYCDEEKWEEEQEHDDVEDDLSSEQSDVTTNNDIFDSTSLFPLLLLEQDLFNEDEELNTLFIKEKTHYEEDLKNVKMMNFDDSLSQPRREAVEWMLKVNAHYGFSSLTATLAVTYFDRFILSFHFQKDKPWMLQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIIRRFGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDGVDYKNQLLNVLKISKEKVDECYNLILQVTNANYNDDYYYGNNNNKRKYEQIPGSPSGVIDAVFSSDGSNDSWTVGSSTYSTSSEPVFKKTKTQGQNVNLSPLNRVIVGILATATTSP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04763 394 Gene3D - 210 300 - -
Tsu01g04763 394 CDD CYCLIN 109 201 IPR013763 -
Tsu01g04763 394 PANTHER CYCLINS 42 359 IPR039361 -
Tsu01g04763 394 Gene3D - 103 209 - -
Tsu01g04763 394 PANTHER CYCLIN-D3-1 42 359 - -
Tsu01g04763 394 Pfam Cyclin, N-terminal domain 91 208 IPR006671 -
Tsu01g04763 394 ProSitePatterns Cyclins signature. 109 140 IPR006671 -
Tsu01g04763 394 Pfam Cyclin, C-terminal domain 211 325 IPR004367 -
Tsu01g04763 394 SMART Cyclin_C_2 211 334 IPR004367 -
Tsu01g04763 394 MobiDBLite consensus disorder prediction 30 44 - -
Tsu01g04763 394 MobiDBLite consensus disorder prediction 30 49 - -
Tsu01g04763 394 SUPERFAMILY Cyclin-like 75 209 IPR036915 -
Tsu01g04763 394 SMART cyclin_7 114 202 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04763 Tsu-Chr1 54777775 54780155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04763 1 305 Core Cell Cycle Gene Families AT4G34160 57.377 1.41e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04763 K14505 - gmx:547740 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04763 01 54777775 54780155 Tsu01g04763 01 54777775 54780155 ECH
Tsu07g00926 07 7580225 7582177 Tsu01g04763 01 54777775 54780155 ECH