Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04754 ATGATGAACCTTAACACCCTCTTGAGATTTTCATCTTTTCTTGTTCTACTGCTACTTCAATATTCAGTTGCTCTTAACTCTGATGGAATTTTCTTGCTTAAGTTCAGATACTCAATCCTTAGTGACCCTTTATCAGTCTTTGATAACTGGAACTATGATGATGCAACTCCATGTTCATGGCATGGAGTTGCATGTAGTGAACTAGGAACTCCTAATACACCTGATTCCTTCAGAGTAACTAGCTTAATCCTTCCAAATAGTCAACTTCTTGGTTCCATTACAGAAGATTTAGGCTTAATCCAAAACCTTAATCACATTGATCTCTCAAACAATTTCCTCAATGGTTCATTACCAAACTCTATCTTCAACTCTTCTCAACTACAATACCTTTCACTCTCAAACAATGTCATCTCAGGTAAACTACCTGAGTTGATTGGTTTATCAACAAACCTTCAAATTCTCAACCTTTCTGATAATGCCTTTGTTGGTTCCATACCAAAAAACCTCACTTCTCTAAAGAATCTAACAGTTGTTTCTTTAAAAAGTAACTATTTTTCTGGTCAAATTCCAAATGGGTTCAACACTGTTGAGATTCTAGATCTGTCCTCAAATTTACTCAATGAATCTCTTCCAAATAACTTCCAAGGCCAAAATCTTCAATACTTCAATCTCTCTTATAACAAACTCTCAGGAGCAATTCCACAAACATTTGCTAAGCACATTCCTGAAAACTCAACAATTGATCTCTCTTTCAACAATCTAACAGGACCAATACCTGAATCTATGGCTTTACTCAATCAAAACACAGATTCATTCTCTGGAAATTCTGATCTTTGTGGAAAACCCCTGAAAAATCTTTGTACTATTCCCTCTAGTATCTCAACTCCACCAGAAAATATCACAAACACATCTTCACCAGCCATTGCAGCTATACCAAGAACAATAGATTCATCACCAGAAACAAACACAACATCAACAACTAGTGGTGATTCTTCTTCTCAGAATGGTCTAAAACCTACTACAATAGCAGCCATTGTTGTAGGTGATATACTTGGCATGGCAATTTTGGCTCTTATCATTCTTTTTGTATAtcaacaaagaaagaaaagatatccaaattcaaaatcaaacactTCACTTCAACAAACAAAAGTGTTAGAATCTGTAGCAAAACAAGATCAAGAATCTCTAAAACCACACTCATATCCATGTTCTTCATGTTGTTTAACAATTAAACAAGAAGAAACATCAGAAGAAGATCCAAGTTCCGACGAAAGCGACCGCGACATTAATACTATTACGGTCCATAACCCGAAAGAAGGCACGCTTGTGACGGTTGATGGCGAGACGAAAATGGATTTGGAGACATTGTTGAAGGCTTCAGCTTATATACTTGGAACAAGTAAAGTGAGTATTGTGTATAAAGCAGTTTTACAAGATGGAAGAGTTTTTGCTGTTAGAAGGATTGGTGAGTGTTGTGTTGAAAGAATGAAGGAATTTGAGAATCATGTTAGAGGTATTGCAAAGGTTAAGCATCCTAATTTGGTTAAGATTCGTGGTTTCTGTTGGGGTGAAGATGAAAAGCTTGTGATTTCTGATTATGTTCCTAATGGCAGCCTCTCCACTATTGGTTACAGAAGAGGAAGTACGTCTCCAATGAACTTATCCTTGGAGTTGCGGTTGAAGATAGCAAAAGGGGTAGCAAGAGGACTAGCATTCATTCATGAGAAGAAACATGTGCATGGCAATGTTAAACCGAGCAATATCTTGTTAAATTCAGAAATGGAACCAATCATAAGTGATTTTGGACTTGACTTACTTCTCTTGAATGATATCAACCATAGAGGAAACGGTTCAGCTAGACAATTAGTGAACCAAAAAACCCAACAACAAAACCAAGAGCTTCTCATTGGTTCAACAACTCCTAGCCCATATGCTACAATGGGGTCATCATCATCTACTAGTGGTAGTAATCAAGTGCAATATCAAGCACCAGAATCTTCTCAAAACATAAAACCAAACCACAAATTGGATGTTTattcatttggtgttgttttgttAGAGCTTTTAAGTGGAAGGATTTTCTCGGACCGGGAATTGGACCAGTGGTCCATTTCCGGTTCAGTTGAAGAGGAGAAAAACCGGGTTTTGAGAATGGTTGATGTGGCAATTAAGCATGAGATTGAAGGTAGAGAAAATGTGGTGCTTACTTGTTTTAAGttggggttgaattgtgtttctcTTGTCCCACAAAAGAGACCATCTATGAAAGAAGCATTACAAATCTTAGAGAAGATCCCTACCGTTggtattaattaa 2319 0.3571 MMNLNTLLRFSSFLVLLLLQYSVALNSDGIFLLKFRYSILSDPLSVFDNWNYDDATPCSWHGVACSELGTPNTPDSFRVTSLILPNSQLLGSITEDLGLIQNLNHIDLSNNFLNGSLPNSIFNSSQLQYLSLSNNVISGKLPELIGLSTNLQILNLSDNAFVGSIPKNLTSLKNLTVVSLKSNYFSGQIPNGFNTVEILDLSSNLLNESLPNNFQGQNLQYFNLSYNKLSGAIPQTFAKHIPENSTIDLSFNNLTGPIPESMALLNQNTDSFSGNSDLCGKPLKNLCTIPSSISTPPENITNTSSPAIAAIPRTIDSSPETNTTSTTSGDSSSQNGLKPTTIAAIVVGDILGMAILALIILFVYQQRKKRYPNSKSNTSLQQTKVLESVAKQDQESLKPHSYPCSSCCLTIKQEETSEEDPSSDESDRDINTITVHNPKEGTLVTVDGETKMDLETLLKASAYILGTSKVSIVYKAVLQDGRVFAVRRIGECCVERMKEFENHVRGIAKVKHPNLVKIRGFCWGEDEKLVISDYVPNGSLSTIGYRRGSTSPMNLSLELRLKIAKGVARGLAFIHEKKHVHGNVKPSNILLNSEMEPIISDFGLDLLLLNDINHRGNGSARQLVNQKTQQQNQELLIGSTTPSPYATMGSSSSTSGSNQVQYQAPESSQNIKPNHKLDVYSFGVVLLELLSGRIFSDRELDQWSISGSVEEEKNRVLRMVDVAIKHEIEGRENVVLTCFKLGLNCVSLVPQKRPSMKEALQILEKIPTVGIN 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04754 772 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Tsu01g04754 772 MobiDBLite consensus disorder prediction 312 337 - -
Tsu01g04754 772 SUPERFAMILY Protein kinase-like (PK-like) 464 766 IPR011009 -
Tsu01g04754 772 CDD TM_EGFR-like 340 370 - -
Tsu01g04754 772 ProSiteProfiles Protein kinase domain profile. 459 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04754 772 Gene3D Ribonuclease Inhibitor 25 195 IPR032675 -
Tsu01g04754 772 Gene3D Ribonuclease Inhibitor 196 289 IPR032675 -
Tsu01g04754 772 Gene3D Phosphorylase Kinase; domain 1 430 534 - -
Tsu01g04754 772 MobiDBLite consensus disorder prediction 639 669 - -
Tsu01g04754 772 Gene3D Transferase(Phosphotransferase) domain 1 535 769 - -
Tsu01g04754 772 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 21 768 - -
Tsu01g04754 772 SUPERFAMILY L domain-like 31 284 - -
Tsu01g04754 772 Pfam Protein kinase domain 464 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04754 772 PANTHER OS04G0122200 PROTEIN 21 768 - -
Tsu01g04754 772 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04754 Tsu-Chr1 54709671 54713164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04754 24 766 Receptor kinase-like Gene Family AT2G15300 49.805 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu01g04754 Pkinase 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04754 - - gmx:100820334 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04754 01 54709671 54713164 Tsu01g04754 01 54709671 54713164 ECH