Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04748 atgggTAGCCTTGAAGTTGCAGAAAGAACAACAATTGGATTGGCTGCAAAAGATCCTTCTGGAATTCTCACTCCGTACAAATACACCCTTAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGTGTATGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCCATGGTTCCTGGGCATGAAGTGGTTGGAGAGGTACTAGAGGTGGGATCAAATGTTAGCAAGTTCAGTGTTGGAGAAATTGTGGGAGTTGGACTTCTTGTTGGTTGCTGCAAAAGCTGTAGGGCTTGTGATTCTGAGATTGAGCAATACTGTAATAAGAAGATCTGGTCTTACAATGATGTTTATGCCGACGGAAAAGTCACTCAGGGTGGATTTGCTGAAGCTACTGTCGTTGAACAGaaGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGTTGCACCATTGTTATGTGCAGGTGTGACAGTGTACAGTCCACTTGCACATTTTGGGCTGAAACAAAGTGGGCTTAGAGGTGGAATATTGGGCCTTGGTGGTGTAGGACACATGGGGGTGAAAATAGCAAAGGCATTTGGTCACCATGTCACTGTGATAAGTTCTTCtgataagaagaagaaagaagcaCTTGAGCATCTTGGAGCTGACAATTATCTTGTTAGCTCAGATACTGTTGGAATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGATACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTGCATTGCTCAAAACTGATGGAAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACCCCTATGGTCATGCTTGGGAGAAAGTCAATTACTGGAAGCTTTGTTGGGAGTGTGAAGGAGACAGAGGAGATGTTAGAGTTTTGGAAAGAGAAGGGTCTAACCTCCATGATTGAAATTGTGACTATGGATTACATTAACACAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTCGTTGTTGATGTCAAAGGAAGTAAAATTGAGGAGTGA 1077 0.4076 MGSLEVAERTTIGLAAKDPSGILTPYKYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVSKFSVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYADGKVTQGGFAEATVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLAHFGLKQSGLRGGILGLGGVGHMGVKIAKAFGHHVTVISSSDKKKKEALEHLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLALLKTDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINTAFERLEKNDVRYRFVVDVKGSKIEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04748 358 Pfam Alcohol dehydrogenase GroES-like domain 35 150 IPR013154 -
Tsu01g04748 358 PANTHER ALDEHYDE REDUCTASE 5 356 - -
Tsu01g04748 358 SUPERFAMILY GroES-like 18 182 IPR011032 -
Tsu01g04748 358 Pfam Zinc-binding dehydrogenase 192 313 IPR013149 -
Tsu01g04748 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 319 IPR036291 -
Tsu01g04748 358 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Tsu01g04748 358 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 5 356 - -
Tsu01g04748 358 Gene3D - 15 351 - -
Tsu01g04748 358 Gene3D - 165 321 - -
Tsu01g04748 358 CDD CAD1 13 350 - -
Tsu01g04748 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04748 Tsu-Chr1 54681636 54684847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04748 1 358 Monolignol Biosynthesis Gene Families AT3G19450 77.374 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04748 K00083 - gmx:100777558 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04748 01 54681636 54684847 Tsu01g04748 01 54681636 54684847 ECH