Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04737 atggAAACCAAAGTTGATGAACTTCAAGTAATGGACCATTTGACCACACCAACAACAACAGGGACCAGTTTCTCTCAGTTACTATTAGAAGATGATAATAATGAAGCTGAATTGGGTTTTGGTGGTGTGGACCAAACCTTTTCAacttctcttttctctcttcatAACACACCTAAAATGCTTTGTTTTGGAAACTATCAAAATGAAATGGAAATTGAAACAAACGTCATAGTAACTCCTCAGAAATCTGTTATTACTTCAAGTGATTCTTCTTCAGCTTCTTCATGCAACCATGCCAACACTGGTTTCAATTccttaacaacaacaacaactaaaCCCAATAAAAAGCGGAATGGGTCAGGAGGAGGAGGACAGGAACTTGGGACCAAAGCAGGTGTTGGAGGGCAGAGAGGTTCTAAGAAGACCAAAGCAGAGAACAACCCCACTTCAACTGGACATGCAAAGAAAAAGGAGAAGCTTGGTGAAAGAATTGCAGCATTACAACAACTTGTTTCTCCCTTTGGCAAGACTGATACAGCTTCAGTGCTTCACGAGGCTACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTCCTGTGCTCTCCATATCTGCAACCTTcacaaattcaatttcaaaatcaccCTGTGAGTCTCATCTCTCATCATAAATCTCATATTGTTCATTAA 690 0.3623 METKVDELQVMDHLTTPTTTGTSFSQLLLEDDNNEAELGFGGVDQTFSTSLFSLHNTPKMLCFGNYQNEMEIETNVIVTPQKSVITSSDSSSASSCNHANTGFNSLTTTTTKPNKKRNGSGGGGQELGTKAGVGGQRGSKKTKAENNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNHPVSLISHHKSHIVH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04737 229 MobiDBLite consensus disorder prediction 87 159 - -
Tsu01g04737 229 CDD bHLH_AtbHLH_like 155 200 IPR045239 -
Tsu01g04737 229 Gene3D - 154 211 IPR036638 GO:0046983
Tsu01g04737 229 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 54 208 - -
Tsu01g04737 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 211 IPR036638 GO:0046983
Tsu01g04737 229 MobiDBLite consensus disorder prediction 87 118 - -
Tsu01g04737 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Tsu01g04737 229 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04737 Tsu-Chr1 54584985 54586176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04737 127 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.422 1.49e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04737 - - mtr:MTR_1g107185 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04737 01 54584985 54586176 Tsu01g04737 01 54584985 54586176 ECH