Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04732 ATGATGATCAATGAAGACCAAACAAGTCTTACAACAACAGCCAAGGAACAACCCGATGATGGAAGCGGAGATGACAGTCCTAAAGAGTGGTTAAACCTGAGCTTAGGAGGCACTTCAGTCTTAACAGCTGAAGAACCTGATTCACAATCAAGACAACCAGCCAAAGTTTTTTCCTGCAACTTTTGCATGAGAAAGTTCTTTAGTTCACAGGCATTAGGAGGTCATCAGAACGCTCACAAAAGGGAAAGAGGTGCAGCAAGAAGAtatcaatctcagagtcagagGGCAATGGCACTAATGGGTTTGTCCATGAACAATATTCCAATGTTTCGATCACTTGGTGTCCAGCCTCATTCACTAGTGCACAAGCCATGCAGAGGTGGAACTATGGTGGCACCGAGCTTTCAAGAAGCATATGCGGCAGGGCTCGGAATGACATGCACCCCTGTCACATCTGAGGATCATACTATTCCGGTATGGCCAGGAAGCTTTCGCATGGTTCCACAACAGCCCCAGCCACCACAAGAGATACTCAAGCTTGATTTAGACCTCAGACTCTGA 561 0.4492 MMINEDQTSLTTTAKEQPDDGSGDDSPKEWLNLSLGGTSVLTAEEPDSQSRQPAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRAMALMGLSMNNIPMFRSLGVQPHSLVHKPCRGGTMVAPSFQEAYAAGLGMTCTPVTSEDHTIPVWPGSFRMVPQQPQPPQEILKLDLDLRL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04732 186 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tsu01g04732 186 MobiDBLite consensus disorder prediction 1 37 - -
Tsu01g04732 186 PANTHER ZINC FINGER PROTEIN 4-LIKE 11 186 - -
Tsu01g04732 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Tsu01g04732 186 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g04732 186 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Tsu01g04732 186 PANTHER ZINC FINGER PROTEIN 4-LIKE 11 186 - -
Tsu01g04732 186 Gene3D Classic Zinc Finger 39 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04732 Tsu-Chr1 54538734 54539604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04732 55 165 C2H2 Transcription Factor Family AT1G66140 35.714 2.48e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04732 - - gmx:100306296 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04732 01 54538734 54539604 Tsu01g04732 01 54538734 54539604 ECH