Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04727 ATGAATATTTCAACTGGAAATTCGGCAAGCAACAACAAATGTACTACCGAGAATATGGGAACTGAACACTGTGATTTGTCTAAAAAAGCAGTTCAGATCGACAATGAATGTTTAGAGAACGGACAAAAGGTGCTTGATACTGTGTTAACTGATTCTGTTATCGATGGAAAGTCAAATGAAGTTTCTGTGGATATGACTGAGAATTCTGTTATTCAACTGCCTGAACCACCTCGTCCTTACTCAGAAAATACTTGTCAGACTTTGGAAGGTTCATGTCTTCAACAAAGTACCTCTGAACAAGTCCCTGTTTGCTTATCCGATGATAAATCAGAAATTAAATGTCCtcaaaatgttaaaaatgaAGAGGGAGAAATGAGTGATGTAGTAACTGctcttgttgttgttgaagagcAAACACAATCTGTTCCTGCTCAAGTGAATTTGGACTCTCTGAACGAGCCATTGGATCCACCTTCTGGAGATGTCacagaaaatattaaaaatgtacCTGGTGAAATGAGCGATGTAGTAACTGGGTTTGTTGAAGACCATACGGAATCCGTTCCTGCTCAAGTGAACACAGATTCTGAGCTACTCGATACGCCTTCTGGAGATATTACGAAAAATGTTAGTTCTAAAAACGAACCTGGTGAAACAAGTGATGTAGTAACTGGGTCTGTTGAAGACCATATGCAATCCGTTCCTGCTCAAGTGAACACAGATTCTGCGAATGAGCTACTTGAAACGCCTTCTGGAgatattatgaaaaatattagttCTAAAAACGAACCTGGTGAAACGAGTGATGTAGTAACTGGGTCTGTTGAAGACCATATGCAATCCGTTCCTGCTCAAGTGAACACAGATTCTGTGAACGAGCTACTCGATACGCCTTCTGGAGATGTTACGaataatattagttttaaaaatgaaCCTGGTGAAATGAGTGATGCAGTGACTGGCCCTGTTGAAGACCAAACGCAATCCGTTCCTGCTCAAGCGGACACTAATTCTGTGAAGAATGAGCTACTCGATACGCCTTCTGGAGACGttgcaaaaaatattagttcTGATTGTTCAGAAAGAAAGTCTAATAACCTGCCTCAGTTGCGAGAGAAACATGcgtataaaaaaaactcaaaactaTCGAAGAAGTACATACTAAGGTCGTTAGGAAGCAGTGACAGAACTCTGCGGTCAAGGACAAAAGATAATAAACCTAAAGATCCTGAACCAATTAATACTGTTGCTGATGTTAATAATGATGAAACGAAGACAAAAGaaaggaggaagaagaagaaaaagacaaGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATATTATCTGAACCGAATTAGCTACGAACAAAACTTGATTGATGCTTATTCTACTGAGGGATGGAGAGGAAGCAGCATGGAAAAATTAAAGCCTGAGAAGGAGATTCAACGGGCCAAGTCCGAAATTCTTCGTCGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCAAAATGCCAGACCAAAGTGTTGGCCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACCGAAGACATACCACCTGGCGATGAGAGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATTGAACTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACCGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCATAACTTGGGACTTCCTTCAGacgattctgatgatgatgactACAATCCTGATGGTCCGGAGGATGGTCCAGAGGATGGCCCAGAGGATGTGGAGGTTGAAGAAGGTGGATCAAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACACCAAGATCAATACATGGGACTTCCTTCTGAAGATTCAGAGGATGATGATTACGATCCTGACGCTCCCATCCTTAGTGATAATGCAACTGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACTGGACAAGATGGTGATGTCACATCTGCATTGTTGGGTGATGTCAAGAACGTCAAAGGTTCTAGCAGAAAAAACCATAAGAAGCCATCTATAGCTGATGAACTTTCATCTTTACAAGAGCCAGGTCTCGGTCAAGAGGATTTGACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTATCAAAAGCTGTATGAAGAGACATACCACAGTGATACTAGTGATGACGAAGATTGGGCTGCCACTGCTATTCCAAGTAGAAAAAAGAGAAACTCTGGCAAAATGACTCCAGTATCACCAAATGGAAATGCCTCAAATAATTCCAGACATACAAATAATTCACCCATCAAAACACTTGAAGGATGTACAGAATCTGGTTCCAGGGGTAAAAAACGTGGATCTTCGTACAAAAAACTCGGAGAAGCTGTTGTTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCAGAACGATCCACCAAAGAAAGCTTGGCCCAAGAACTTGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGCATTCACCACGTATGCAGGCTAGCCCAGGTAGTAATGCTTCGCAGCAGGCCACCGACAGTGGAGCTGAAAATAAAGAAGAGAGAGGCAATGCTTCGCAACAGGCAACTGACAGCGGAGCTGAAAATAAAGGAGAGAGAGGTAATGCTTCGCAGGAGGCCACTGACAGCGGAGCTGAAAATAAAGGAGAGAACGAACTTGAATTAGTTTACCAGGAGACTAGTGGGGAAAAATCAAGAACCCGAAATTCCAAGAAAAGGAAGCGTTTGTCTGAGCCGCAGGCATCTGAAGCAGGGCCAGTTCATAGCGGCCCAACCCCCGATTCCTCGCCAAAAGTTGATACAGGCAATACAacgaaaaaaaagaaagggaaaTGA 3150 0.3987 MNISTGNSASNNKCTTENMGTEHCDLSKKAVQIDNECLENGQKVLDTVLTDSVIDGKSNEVSVDMTENSVIQLPEPPRPYSENTCQTLEGSCLQQSTSEQVPVCLSDDKSEIKCPQNVKNEEGEMSDVVTALVVVEEQTQSVPAQVNLDSLNEPLDPPSGDVTENIKNVPGEMSDVVTGFVEDHTESVPAQVNTDSELLDTPSGDITKNVSSKNEPGETSDVVTGSVEDHMQSVPAQVNTDSANELLETPSGDIMKNISSKNEPGETSDVVTGSVEDHMQSVPAQVNTDSVNELLDTPSGDVTNNISFKNEPGEMSDAVTGPVEDQTQSVPAQADTNSVKNELLDTPSGDVAKNISSDCSERKSNNLPQLREKHAYKKNSKLSKKYILRSLGSSDRTLRSRTKDNKPKDPEPINTVADVNNDETKTKERRKKKKKTRKEGINDQFSRIRAQLRYYLNRISYEQNLIDAYSTEGWRGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLATNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDESWLCPGCDCKDDCIELVNDLLGTSLSLTDTWERVFPEAATAAGSILDHNLGLPSDDSDDDDYNPDGPEDGPEDGPEDVEVEEGGSSSDESEYASASEKLEDSHQDQYMGLPSEDSEDDDYDPDAPILSDNATEESSSSDFTSDSEDLAATIKDNMSTGQDGDVTSALLGDVKNVKGSSRKNHKKPSIADELSSLQEPGLGQEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWAATAIPSRKKRNSGKMTPVSPNGNASNNSRHTNNSPIKTLEGCTESGSRGKKRGSSYKKLGEAVVQRLYKSFKENQYPERSTKESLAQELGLTFQQVDKWFGNTRWSFRHSPRMQASPGSNASQQATDSGAENKEERGNASQQATDSGAENKGERGNASQEATDSGAENKGENELELVYQETSGEKSRTRNSKKRKRLSEPQASEAGPVHSGPTPDSSPKVDTGNTTKKKKGK 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04727 1049 Pfam PHD-finger 535 590 IPR019787 -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 396 411 - -
Tsu01g04727 1049 ProSitePatterns Zinc finger PHD-type signature. 536 587 IPR019786 -
Tsu01g04727 1049 SUPERFAMILY FYVE/PHD zinc finger 525 593 IPR011011 -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 952 982 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 188 223 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 788 821 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 626 875 - -
Tsu01g04727 1049 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 333 1011 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 925 1049 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 310 371 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 634 666 - -
Tsu01g04727 1049 SMART PHD_3 535 588 IPR001965 -
Tsu01g04727 1049 Gene3D - 869 938 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 925 945 - -
Tsu01g04727 1049 ProSiteProfiles Zinc finger PHD-type profile. 533 590 IPR019787 -
Tsu01g04727 1049 SMART HOX_1 865 931 IPR001356 GO:0003677
Tsu01g04727 1049 Pfam Homeodomain 880 923 IPR001356 GO:0003677
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 321 364 - -
Tsu01g04727 1049 PANTHER HOMEOBOX PROTEIN HAT3.1 333 1011 - -
Tsu01g04727 1049 ProSiteProfiles 'Homeobox' domain profile. 867 927 IPR001356 GO:0003677
Tsu01g04727 1049 CDD PHD_PRHA_like 535 587 IPR045876 -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 829 858 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 709 743 - -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 983 1004 - -
Tsu01g04727 1049 SUPERFAMILY Homeodomain-like 866 930 IPR009057 -
Tsu01g04727 1049 MobiDBLite consensus disorder prediction 389 440 - -
Tsu01g04727 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 518 598 IPR013083 -
Tsu01g04727 1049 CDD homeodomain 881 927 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04727 Tsu-Chr1 54516141 54524105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04727 429 928 Homeobox Transcription Factor Family AT3G19510 46.570 5.93e-129 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Tsu01g04727 PHD 5.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04727 - - cam:101500744 1298.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04727 01 54516141 54524105 Tsu01g04727 01 54516141 54524105 ECH