Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04719 ATGCTGCGTTTGTGCTTCAACCCTCTCGATTATTGCTTCCGACGCCGTGCTGCCTCTGATTTTCTTCTCTGGCATACCGACTTAAAACCTCATGCTTCCGGTGATTTCTCTATAGCCGTCGCTCAGGCTAATTACAGCCTTGAAGATCAGAGTCAAGTCTTTACCTCACCTTCCGCTACCTATGTCGGTGTTTACGACGGTCATGGTGGTCCTGAAGCTTCTAGATTCGTCAATAACCGTCTCTTCCCTTATTTACACAAATTTGCTTCTGAGCAAGGGGGATTATCAGTAGATGTGATTAAAAAAGCTTTTAGTGCGACCGAAGAGGATTTTTTGCATTTGGTTAAGTTGTCGTTACCAGTTAGTCCTCAAATTGCGTCTGTTGGATCGTGCTGTCTACTCGGTGCAATTTCTAACAATGTGTTATATGTGGCTAACCTTGGAGACTCAAGAGTTGTTCTTGGCAGGAGGTATTCTGAGAACAAGAATTATCCAGTGGAGGCTATCCGCTTATCAACAGATCATAATGTAGCAGATGAGGAGGTGAGGAGAGAAGTCGAGGCTCTCCACCCTGATGATTCACACATTGTGGTTTATACCCGTGGAGTTTGGAGAATTAAGGGCATCATACAGGTGTCTAGATCTATCGGTGATGTGTATTTGAAGAGACCAGATTTCTACAGAGACCCCATTTTTCGGCAATTTGCAAGTCCTATTCCTTTGAAGCGTCCAGTTATGACAGCTGAACCATCAGTCATTATTAGGGAGTTAGAGTCAGATGATTTATTCTTGATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCTGCAGTTGATATTGTTTTCAAATCTCCAAGAGTCGTGAGTATCTTCTGTTACTTGTGA 894 0.4306 MLRLCFNPLDYCFRRRAASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSVDVIKKAFSATEEDFLHLVKLSLPVSPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRRYSENKNYPVEAIRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFASPIPLKRPVMTAEPSVIIRELESDDLFLIFASDGLWEQLSDEAAVDIVFKSPRVVSIFCYL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04719 297 SUPERFAMILY PP2C-like 44 286 IPR036457 -
Tsu01g04719 297 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 290 - -
Tsu01g04719 297 PANTHER ALPHABET, ISOFORM E-RELATED 4 290 - -
Tsu01g04719 297 Pfam Protein phosphatase 2C 56 284 IPR001932 -
Tsu01g04719 297 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Tsu01g04719 297 CDD PP2Cc 48 292 IPR001932 -
Tsu01g04719 297 ProSiteProfiles PPM-type phosphatase domain profile. 35 297 IPR001932 -
Tsu01g04719 297 Gene3D - 25 291 IPR036457 -
Tsu01g04719 297 SMART PP2C_4 29 291 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04719 Tsu-Chr1 54459075 54461900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04719 17 289 PP2C-type Phosphatase Gene Family AT3G51370 53.737 5.32e-109 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04719 - K01102 gmx:100812137 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04719 01 54459075 54461900 Tsu01g04719 01 54459075 54461900 ECH