Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04718 ATGACGAGCGCTTCAGAACTCTTCCACATCAGGAGACACCGATTAGGTCGAAATGATATCGATTCATCTTTCCACTCTTCACCTACTCCCGATTTCCATCCCCACCGCATTCACGATTCCGACGATGACGATTCTCTCCGTATCCGCCGCCACGTCCGCCGCCTCCGTCACCCGGAGCGTGGATCTGATAGACTTGATGTGAGTTATGGTCGGAGAGGCGGTGAAAGATTACCTGTTGATGTTAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGGAGAGCCTGCAGATAGAATCAgGCAATACGATAGAGATTTAATGGACGAAGATCAAGAAAGTGAGTTATCAAGTGAATCTGTGGACTCTATAGTTAATGATTTGACTTCTACAATGGCAAGGTTCCAGCTCTTGCATCAACAATCCAAGAAGCCACCGGGACTCACTCAGGAGGCGCTGGACTGTTTGCATGTTAAAGTTTTTAGCAGCAGCGAGACCCTATCAGAATCCAGTGTACTGCAGGATTGTGGGATATGCTTGGAATCTTTCACAGACGGGGATAAACTAATCCATTTGCAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTGAATAGTCAGTCACCTTCCATAGAATGA 696 0.4655 MTSASELFHIRRHRLGRNDIDSSFHSSPTPDFHPHRIHDSDDDDSLRIRRHVRRLRHPERGSDRLDVSYGRRGGERLPVDVRLARERLLQRLRGGEPADRIRQYDRDLMDEDQESELSSESVDSIVNDLTSTMARFQLLHQQSKKPPGLTQEALDCLHVKVFSSSETLSESSVLQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVNSQSPSIE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04718 231 CDD RING-H2_PA-TM-RING 176 218 - -
Tsu01g04718 231 MobiDBLite consensus disorder prediction 18 44 - -
Tsu01g04718 231 Pfam Ring finger domain 176 218 IPR001841 -
Tsu01g04718 231 SMART ring_2 177 217 IPR001841 -
Tsu01g04718 231 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Tsu01g04718 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Tsu01g04718 231 SUPERFAMILY RING/U-box 159 224 - -
Tsu01g04718 231 PANTHER SI:CH211-59O9.10 102 223 - -
Tsu01g04718 231 PANTHER SI:CH211-59O9.10 1 119 - -
Tsu01g04718 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 102 223 - -
Tsu01g04718 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04718 Tsu-Chr1 54450492 54453507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04718 1 222 C3H Transcription Factor Family AT1G49850 40.856 1.95e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04718 - - gmx:100814695 233.802