Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04715 ATGGGTGACACTGTCAATGAAGAGCATCGCACGGCTAGTGCACCGGTTGCTTCTCCTAAGAAGGACACACCTTTCTTTGAAGGGGACAAAGATTTTGAGCCACCCAATGGCATTGAATTTGAATCTCATGAAGCGGCATATACATTTTATCAAGAATATGCCAAATCTATGGGATTCACTACTTCAATTAAAAACAGCAGACGATCAAAGAAGACAAAAGAATTCATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACACCTGAGTCTGATAGTGGTAGCAGTCGAAGACCAAGTGTAAAGAAGACTGATTGCAAAGCTTGCATGCATGTCAAGAAAAAGCCGGATGGAAAGTGGACCATTCATGAATTTATAAAGGATCACAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAaaagaataatattgatatCTTGCATGCCGTTAGTGAACGCACAAGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCTACTGTGGGAGATATAAATTATCAGTTTGACAGAGGCCAGTTTCTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTGGAGTATTTCAAGCACATTCAAAAGGATAATCCGAACTTCTTCTATTCTATAGATTTAAACGATGAACAACgtttaagaaatatattttgggTTGATGCAAAAAGCATTGAAGATTATCTCAGCTTCAATGATGCAGTTTCATTTGATACTACCTACATAAAAAGCAATGAAAAGTTGCCTTTTGCTCCTTTTATTGGTGTGAACCATCACTCTCAACCTATATTGCTTGGATGTGCATTGATTGCAGATGAAACTAAGCCAACTTTTGTTTGGTTACTGAAGACGTGGCTTAGAGCGATGAGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAGGCAATTGAAGAAGTCTTCCCAAACGTACGACATTGCTTTTCTCTTTGGCACATATTGGAAAAGATACCCGAAAATCTGTCTTTTGTGATAAAACAGTATAAGAACTTCTTGCCAAAGTTCAACAATTGCATTTTTAAGTCGTGGACAGATGAACAGTTTGACTTGAGCTGGTGGGAAATGGTGACTATATTTGAACTCCAGGATGATGTATGGTTTCATTCATTGTATGAAGACCGGAAAAAGTGGGTACCAACGTACATGGGGGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGAAAGTATGAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAATATGGGTTAATTCTTCAGAATAGGTATGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTACACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGTTGTCAATCTAGGGTAGAGGTTGGAGATGGAACTGTTGCGAAATTTATAGTTCAAGATTATGAGAAGGATGAAGAATTTTTGGTAACTTGGAATGAGTTGAGCTCAGAGGTCACTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGTGGTTGTTCCAGTGTTCCATCGCAATATATCATAAAGAGGTGGACCAAAGATGCCAAAATTAGGGAACCCATAACAGATACAAGAAGGGTACAAACTAGGGCTCAACGTTATAATGATTTGTGCAAACAAGCTATTGAGTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTATCCGCGCACTTGTCAATTCCCTGAAGAACTGTGTACATGTAAATAACTCTAACGACAATGGTGCAGAAGCTGGTAACAGTGGTTACAATCTTCGTGAAGCAGAAGAAAATCAGAGTACCCTTGCTTTGAAACCAAGTAAGAAGAGGAACCCAACTAGGAAAAGAAAGGTGCAGCAAGAGCAGAATCCTGTACTTGTCGACGCTCAAGATAGCCTGCCGCAAATGGATAATCTTACCTCGGATGCAATGAACCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAACCACCTCAGGATGGTTACTATGTTAATCAGCAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGGTCCGAGCCATGATGGATTTTTCGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAATATCGTCCAACAACCACTTTCGGATATAGCCTTCAGGATGAGCATGATCCACATTTTCACAGCAACAATTCAAGAAATACTTAG 2427 0.3927 MGDTVNEEHRTASAPVASPKKDTPFFEGDKDFEPPNGIEFESHEAAYTFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKKKPDGKWTIHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSTVGDINYQFDRGQFLALDEGDAQVMLEYFKHIQKDNPNFFYSIDLNDEQRLRNIFWVDAKSIEDYLSFNDAVSFDTTYIKSNEKLPFAPFIGVNHHSQPILLGCALIADETKPTFVWLLKTWLRAMRGQAPKVIVTDQDKALKEAIEEVFPNVRHCFSLWHILEKIPENLSFVIKQYKNFLPKFNNCIFKSWTDEQFDLSWWEMVTIFELQDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGLILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRVEVGDGTVAKFIVQDYEKDEEFLVTWNELSSEVTCFCRLFEYKGFLCRHALSVLQRCGCSSVPSQYIIKRWTKDAKIREPITDTRRVQTRAQRYNDLCKQAIELSEEGSLSEESYNVAIRALVNSLKNCVHVNNSNDNGAEAGNSGYNLREAEENQSTLALKPSKKRNPTRKRKVQQEQNPVLVDAQDSLPQMDNLTSDAMNLNGYYGTQQNVQGLHVQLNLMEPPQDGYYVNQQSMQGLGPLNSMGPSHDGFFGTQQSIHGMGGQLEYRPTTTFGYSLQDEHDPHFHSNNSRNT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04715 808 SMART 26again6 546 573 IPR006564 GO:0008270
Tsu01g04715 808 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Tsu01g04715 808 MobiDBLite consensus disorder prediction 666 706 - -
Tsu01g04715 808 Pfam MULE transposase domain 256 348 IPR018289 -
Tsu01g04715 808 MobiDBLite consensus disorder prediction 688 706 - -
Tsu01g04715 808 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 14 723 - -
Tsu01g04715 808 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Tsu01g04715 808 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Tsu01g04715 808 MobiDBLite consensus disorder prediction 1 34 - -
Tsu01g04715 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 723 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04715 Tsu-Chr1 54432424 54436981 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g04715 MULE 1.2e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04715 - - gmx:100814153 1451.03