Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04706 aTGAGCTGCAACGGTTGCCGTGTATTAAGAAAAGGATGCAGTGAGGATTGCATGCTAAGAGATTGCTTAACATGGATACAAAATCCACAAGCTCAGGCTAACGCCACCGTGTTCGTCACCAAATTCTTCGGCCGTGCAACCCTCTTGTCTTTCCTTTCCTCCGTTCCCCCCAACCAAAGATCCGCTATGTTTCAGTCACTTATGTATGAAGCTGTGGGGAGGACTATAAATCCAGTTAATGGAGCAGTGGGGATGTTGTGGACTGGCAAGTGGCAATTCTGTCAATTGGGTGTGGAACAAGTACTCAGAGGCAGCGGTGGCGCGTTGACACCGCTGCCTGATCTTCATGAGAGTAATGAAAAGGGAAGTAGTTCTGGTGATCATCAACAACAGCTAATGATTgaagaaaattattataatgaatTAGAAGAAACACAATCTGATGGGTTGATGTCACAGTCGGAACAGTGCCACCGAGCAAAAAAACAACGCGTGGAGACACAGTCCGAAGAATCGGAGGAGTCTTCTACATTGGGAAGTAGAACAGAAAGAACAGTCACAGAGGattgtttttatgtttatgcTAATTCTCAAACTCATCAAAGGAAGCAGCAGCAGCAGCTCCTTACACTATTCTTATAA 642 0.4346 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQANATVFVTKFFGRATLLSFLSSVPPNQRSAMFQSLMYEAVGRTINPVNGAVGMLWTGKWQFCQLGVEQVLRGSGGALTPLPDLHESNEKGSSSGDHQQQLMIEENYYNELEETQSDGLMSQSEQCHRAKKQRVETQSEESEESSTLGSRTERTVTEDCFYVYANSQTHQRKQQQQLLTLFL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04706 213 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Tsu01g04706 213 MobiDBLite consensus disorder prediction 109 129 - -
Tsu01g04706 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - -
Tsu01g04706 213 MobiDBLite consensus disorder prediction 146 182 - -
Tsu01g04706 213 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tsu01g04706 213 PANTHER LOB DOMAIN PROTEIN 1 213 - -
Tsu01g04706 213 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04706 Tsu-Chr1 54381274 54382040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04706 1 115 AS2 family AT5G67420 68.696 4.12e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu01g04706 LOB 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04706 - - mtr:MTR_1g106420 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04706 01 54381274 54382040 Tsu01g04706 01 54381274 54382040 ECH
Tsu05g00551 05 4496591 4497951 Tsu01g04706 01 54381274 54382040 PCT