Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04704 atggGTTCAAGATCTGTGGAAGGAGAACAGTCATCACTCGCTGATGATTATGATACCTTGATTTCAACCACTGATGTTGAGCTTCTCAAGCGAGCTTGGCGTAATGAAAAGGCAGCCCCTGAGATTCTTCGTTTTGAATCTGATTTGATCACCCGTGTCAGAGAACAGATTGAATTAATGGAAGAAACCGTCGAGGAGAAATTGACTGTTGGTACCGACCCTCTTTCAGTATCTCTGTATCAGATGGACTTAGATAGAACCTTATTTCTGTTAAGGTCATATCTTCGCATCCGCATCCTGAAGATCGAAAAGTACATGTTCCACATCCGAAAAACTGAAGAACTTTGGAACAGGCTTTCTAAGGATGAGAAATTTTTCACCGAAAGGTGCACAGATGACCTAAAGAAACATCTGGAGGAGAGTGTTCTATCTAAACTGCCTGAAAATTATCAGTCTCATGAGAGGCAATCTGTAATCAGTGAAGAGGATGACATGGTTCCAGAACCACGACTAGACACATTTGTTTTGTGTAGAAGTAAAGAATACCTCACAGGCATTCAACTTGAAGATGGACCTGTCGATGACAGGTCGAAGCTGTTTGAAATGGAGCCTGATGTCCTTTACTTTATATGTTACAAATCTATAAAGCCACTTGTAGAGAGTGTCATGGAAGATGAATCACCACGACAACTTGACATTGTTCCTGTTCCAGTTCAACCGCCACCAATATCAATTGACATCGGACATCATTTTGTGAATGAGGCTAAAGAGGAGTCCAAAGAAGTTTTGATCAAATGGGCTCGCAAAGTAGCagaaaaattgaagtttaccaTTATAATTAGGAGATCGGACAACGGCAGGGATAAGAGTAGAAAACCGTTTTTTGTGTTGGAGTGCGAACGAAGCGACAAGTACGTGCCACCTACAAAGAAGTTGAAATCCGATTGTACGGGAACAAGGAAGTGCGGATGTCCATTCCGACTTCGTGGTTAttatacaaaagaaacaaagttatGGCATTTGAATGTGGTGAATGGCATACACAACCACGAGTTGGACACGGAGCTTGAAGGGCATCTTGTGGCGGGTCGGTTGAAGCCGGAAGAGAAGGTATTGTTGGATGAAATGACCAAGAATTTGGTTCCACCAAGAAATATCATCTCGACATTGAAAGATAGAGATTCGGAGAACAAGATGTCATCAAAGCAAGTATACAACGCCCGATATAGGTTTCATGTTGAGAAAAATGAGGGAAACAAGATAAAGGAGCTAGTGAAAGTAAGACACGGAGAAGAGGTGCAGGCGGCAATTGTGTGGGAGAATGTGGAAAATGCCTTCAAGCATTTGAGAACCTCAGCTACAATCGAGATGTATGGTGATCGCATTATGGAGTTTAGGGAGCTATGTAAGAAGTGGCCAAGATTCTTGCGCTATATTGAAGAAACAGTTTTGGACACGGATAAAGAGAAGTTTGTCCATGCTTGGGTAGACAAGCATATGCACATGAGAAACTATACCACAAATAGAGTTGAATGTGCCCATGGTGTCTTGAAAAAATACTTGACGGACAGTTCTGGTGATTTGGTGAAGGGTTGGGAAGCGATACATCAAATGTTGGGAATTCAATTCACCGACGttcaaactcaatttggtcagagCATGTCTGTAGAGCATGAACAGTTGAAAACATCATATGAAGCTACGAAAAATGAAATCAGAGATCAACTCCGTCTAATTGCATATAATGAATCTATCTCTCTCAAATCTCTGGTTCAAGATGCCAAATCAAAAGgggctaaaaagaaaaaggcgGCGGTTCGTGGCAAAAACAAATCCACAACTAGAGATAAGTCCTGGTGGGAGCATGTTGATGCATACTTTGCGGAGACACAGACATCTCAATCAAATCCGTCAAAGTCATCTCAGTTGAATGCGTCATTACCACAAGCTTCATCATCTATTATGTCCAAAGCTCCAGTCATTGGTAACTTTACTCCGACTCTATCTCAAATTGTTGAGTTTGACCACATGCCGAAGTGTATGCATCCTTTTATTGAAGATATAGTTGATGTGGAAAGTGACGGTTTTTGTGGGTTCCGCGCGATAGCATTggctacaaaaaaaaatgaagcgGATTTTGAGTTGGTACGGCTTAACATGCAAAGGGAGATGACTTTGCATAGGAGTATGTATGTTAGCATGTATGATGGTGAGGAACGttggaaatatatttatgatgcACTATTCCCACCTCCGAGACAGAGAACCTCTCTTAGGAAGACAATTGCACCAAAAGATAAATGA 2304 0.3963 MGSRSVEGEQSSLADDYDTLISTTDVELLKRAWRNEKAAPEILRFESDLITRVREQIELMEETVEEKLTVGTDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTEELWNRLSKDEKFFTERCTDDLKKHLEESVLSKLPENYQSHERQSVISEEDDMVPEPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESVMEDESPRQLDIVPVPVQPPPISIDIGHHFVNEAKEESKEVLIKWARKVAEKLKFTIIIRRSDNGRDKSRKPFFVLECERSDKYVPPTKKLKSDCTGTRKCGCPFRLRGYYTKETKLWHLNVVNGIHNHELDTELEGHLVAGRLKPEEKVLLDEMTKNLVPPRNIISTLKDRDSENKMSSKQVYNARYRFHVEKNEGNKIKELVKVRHGEEVQAAIVWENVENAFKHLRTSATIEMYGDRIMEFRELCKKWPRFLRYIEETVLDTDKEKFVHAWVDKHMHMRNYTTNRVECAHGVLKKYLTDSSGDLVKGWEAIHQMLGIQFTDVQTQFGQSMSVEHEQLKTSYEATKNEIRDQLRLIAYNESISLKSLVQDAKSKGAKKKKAAVRGKNKSTTRDKSWWEHVDAYFAETQTSQSNPSKSSQLNASLPQASSSIMSKAPVIGNFTPTLSQIVEFDHMPKCMHPFIEDIVDVESDGFCGFRAIALATKKNEADFELVRLNMQREMTLHRSMYVSMYDGEERWKYIYDALFPPPRQRTSLRKTIAPKDK 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04704 767 SUPERFAMILY PriA/YqbF domain 171 220 - -
Tsu01g04704 767 Pfam Transcription factor AFT 309 352 IPR014842 GO:0000981|GO:0036086
Tsu01g04704 767 Gene3D - 12 217 - -
Tsu01g04704 767 SUPERFAMILY GINS helical bundle-like 22 157 IPR036224 -
Tsu01g04704 767 CDD GINS_A_Sld5 25 143 IPR038749 -
Tsu01g04704 767 PANTHER SLD5 PROTEIN 10 221 IPR008591 GO:0006261
Tsu01g04704 767 Pfam DNA replication complex GINS protein SLD5 C-terminus 169 221 IPR031633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04704 Tsu-Chr1 54360850 54366685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04704 1 174 Core DNA Replication Machinery Family AT5G49010 62.644 3.45e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04704 K10735 - gmx:100784291 334.339