Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04698 atggaacctGCCCAATTGATTTTTGAAGAATGGAACTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGACTTCATGGCTCAGTTCCTTAGTTGTAATGGAAATACAAATTTTGGGATGCCATCTTATTTTCCTTCAAATGTTGCAAATTCTAATTTTATGTGTTTCTCCAAAGGTATTAGCATTAGCACTGATAATAGTGCTAATACATTTTCCACCACAAGTAATGGAACCTACTCATATGATTTGGAAACAAATATTGATTCCTTGTTATTTTGTTTGGAAGATGCCAAATTAAGTTCACAATATTTTGATGATAACTTAAGCAAACAGATAAATTATGAAAGTATTGATCATGAAGGGCCAGGGTCAACTTTAGAGCTGGTTCATGCTAAGAACAATTTGCAGGCTAAGAGAGAGGATGATCATGAAATGATGATGGTTTCTGAACCTTCTTCAGAAGAGGATAGTAGCCAAAACATGGAGAACCCTGCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAAGAAACATGAGGAATGTTAGAAAGTGTCCAAAATCTGCTTCTATGAACAACAATGAAGAGGGTCTACAGTGGCATGGGTTCAACAACTGTTTTTCTCAGGTTGACTCAAATGCTTATATGGAGCTAAATGAAGGAACATCTCCAAGTCTAAGCCCAAAAGAACATGAAGCACctaatttatgtaaaaaatcAAGAGCAACAAATGGTCCTGCCACTGATTCACAAAGCATTTATGCAAGAAAGAGAAGGGAAAGAATAAATGAAAGGTTGAGAATCTTACAAACCCTTGTCCCAAATGGAACCAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGATGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTCAGTTTTAATTAA 981 0.3568 MEPAQLIFEEWNSLSGQYTAEEADFMAQFLSCNGNTNFGMPSYFPSNVANSNFMCFSKGISISTDNSANTFSTTSNGTYSYDLETNIDSLLFCLEDAKLSSQYFDDNLSKQINYESIDHEGPGSTLELVHAKNNLQAKREDDHEMMMVSEPSSEEDSSQNMENPAKRFRSSIEVSRNMRNVRKCPKSASMNNNEEGLQWHGFNNCFSQVDSNAYMELNEGTSPSLSPKEHEAPNLCKKSRATNGPATDSQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGINIGLDLSFN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04698 326 Gene3D - 246 304 IPR036638 GO:0046983
Tsu01g04698 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 311 IPR036638 GO:0046983
Tsu01g04698 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 324 - -
Tsu01g04698 326 SMART finulus 251 300 IPR011598 GO:0046983
Tsu01g04698 326 Pfam Helix-loop-helix DNA-binding domain 255 295 IPR011598 GO:0046983
Tsu01g04698 326 MobiDBLite consensus disorder prediction 220 250 - -
Tsu01g04698 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Tsu01g04698 326 MobiDBLite consensus disorder prediction 140 164 - -
Tsu01g04698 326 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 43 324 - -
Tsu01g04698 326 CDD bHLH_AtIND_like 246 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04698 Tsu-Chr1 54293534 54302429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04698 10 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 35.097 2.66e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g04698 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04698 - - gmx:100816788 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04698 01 54293534 54302429 Tsu01g04698 01 54293534 54302429 ECH