Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04697 ATGGATCATTCTGAACAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAAGAAGCTGATTTTATGGGCCAGTTACTTAATAACAGTCAAGTCCCTCAGCACCATTATGGAAATTTCAATTTGGAAATTCCATCTACATTATGGCCACATGACTCCACAATAATGAGCATCAATAACAGTTCACATTTTCCTCAAAATTAtgataataatagtaatagtgattttttgagttttttacAAGAAAGTAACTCCATTTCTGCTACTAGCAATATATCTCCTAGTACTATAAATGGTGGTAACATATGTTTGAATGATCAAGTAGCCAACATTGGATACATATCCATGGAGAATGGTAATTTTAGCACTTATAGTATTCAAGGGAATGATAGCCAACAGATAACAGAAAACACTGATGAAGAGTTTGGTCAAGAGGTTTCGAAATCAACCAAAGAGGGTATTAGCAACAACCTGGAAAAGCCAGGAAAAAGATCTAGGAGCTATGTAAAGGTacaaaaaaacaagagaaatgTTAAATCTAGGAAGAAACCAAAATCTGAGATCATAAGCAACACTGAAGAGGACGAAAGCACTGATCTTCAGGAACAAAATTTGAGCTCAGAGGATGATGACTTCAATGCTTCACAAAAGCTAAATGCAGGAGGGTCTTCAATCGTGAAGCAAAATGATTCAACAGCTCTGAAGTTAAAGGGAAAAACAAGATGTGATAAAAGTTCTGCCACTGATCCACAAGGTGTCTATGCAAAAaaaagaagagaaagaataaatGAAAGGTTGAAAATCTTACAAAGCCTAGTCCCTAATGGAACCAAGGTAGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTCCAGATTAAGCTTCTGAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTAAACCTTGACATTAATTATCCCAACCAAACTACCATAGAGCACATAAGAAAATAG 1029 0.346 MDHSEQSCEEWSSLSGFYTAEEADFMGQLLNNSQVPQHHYGNFNLEIPSTLWPHDSTIMSINNSSHFPQNYDNNSNSDFLSFLQESNSISATSNISPSTINGGNICLNDQVANIGYISMENGNFSTYSIQGNDSQQITENTDEEFGQEVSKSTKEGISNNLEKPGKRSRSYVKVQKNKRNVKSRKKPKSEIISNTEEDESTDLQEQNLSSEDDDFNASQKLNAGGSSIVKQNDSTALKLKGKTRCDKSSATDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLDINYPNQTTIEHIRK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04697 342 CDD bHLH_AtIND_like 250 312 - -
Tsu01g04697 342 PANTHER TRANSCRIPTION FACTOR BHLH54 8 329 - -
Tsu01g04697 342 Gene3D - 257 310 IPR036638 GO:0046983
Tsu01g04697 342 MobiDBLite consensus disorder prediction 210 235 - -
Tsu01g04697 342 MobiDBLite consensus disorder prediction 170 185 - -
Tsu01g04697 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 315 IPR036638 GO:0046983
Tsu01g04697 342 MobiDBLite consensus disorder prediction 133 235 - -
Tsu01g04697 342 Pfam Helix-loop-helix DNA-binding domain 259 299 IPR011598 GO:0046983
Tsu01g04697 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Tsu01g04697 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 329 - -
Tsu01g04697 342 SMART finulus 255 304 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04697 Tsu-Chr1 54288823 54290392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04697 10 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.167 2.72e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g04697 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04697 - - gmx:100817334 384.415