Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04689 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCATGTGAAAAAACAGTTTATCTTGTTGATAAGCTAACCGCAGATGGTCGTATTTATCATAAGGCCTGCTTCCGATGCAACCATTGCCGGAATACCCTTAagCTAAGCAACTACTGTTCTTTTGAGGGGGTGCTCTATTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGCAGCCTGGACAAAAGCTTCCAAGGAACACCCAAAATCCAGAAACTAGAAAGACAGATCAGTGAGAATGAGAATACCAAGACAGTAGCAAACATGTTCTCGGGCACCACAGACAAATGCATGTGTTGCAAAAAGACTGTGTATCCCACTGAGAGGGTTACGGTTAATGGGACTCCGTATCACAAAGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAACTCAGCAAACTTTGTTACACATGAAACAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAGGGAAATTACAGTCAGCTTGAGACTGAAATTACTGTTTAA 546 0.4194 MASFGGTTQKCMACEKTVYLVDKLTADGRIYHKACFRCNHCRNTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFQGTPKIQKLERQISENENTKTVANMFSGTTDKCMCCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTINSANFVTHETKLYCKHHHIQLFKEKGNYSQLETEITV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04689 181 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Tsu01g04689 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Tsu01g04689 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Tsu01g04689 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Tsu01g04689 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Tsu01g04689 181 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Tsu01g04689 181 Pfam LIM domain 110 165 IPR001781 -
Tsu01g04689 181 Pfam LIM domain 11 65 IPR001781 -
Tsu01g04689 181 Gene3D Cysteine Rich Protein 6 75 - -
Tsu01g04689 181 Gene3D Cysteine Rich Protein 104 174 - -
Tsu01g04689 181 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 178 - -
Tsu01g04689 181 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Tsu01g04689 181 SMART lim_4 10 62 IPR001781 -
Tsu01g04689 181 SMART lim_4 109 161 IPR001781 -
Tsu01g04689 181 PANTHER OS06G0237300 PROTEIN 1 178 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04689 Tsu-Chr1 54197746 54198950 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tsu01g04689 LIM 3.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04689 K09377 - gmx:100306027 343.584