Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04669 ATGAAGGATAACGGTGTTGATGCTGGTCAGAAGCAACTAACCATGAAAGATGCACTTAGATTTCTTAATGATGTAAAAGTTGCTTTTCAAAATGAGACGGAAAAGTACGATGAGCTTATAAAAATTATGGAGGATTTCAAAGCTTCCAAAATTAACACAATTGATGTCATCTCAAAAGTGAAGGAGCTGTTTAAAGGACATACATATTTAATTGCGGGATTCAACAACTTCTTACCAAAGGGATATAAAATTGTATGCCCTTCTTTCACTCGAAACCTTGTTCAACTTATGTTTTGGTTTAGTTTTGAATTGGAATGA 318 0.3365 MKDNGVDAGQKQLTMKDALRFLNDVKVAFQNETEKYDELIKIMEDFKASKINTIDVISKVKELFKGHTYLIAGFNNFLPKGYKIVCPSFTRNLVQLMFWFSFELE 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04669 105 Pfam Paired amphipathic helix repeat 34 78 IPR003822 GO:0006355
Tsu01g04669 105 PANTHER SIN3B-RELATED 7 90 IPR039774 GO:0003714
Tsu01g04669 105 PANTHER SIN3A, ISOFORM G 7 90 - -
Tsu01g04669 105 ProSiteProfiles PAH domain profile. 11 81 IPR003822 GO:0006355
Tsu01g04669 105 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
Tsu01g04669 105 SUPERFAMILY PAH2 domain 11 80 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04669 Tsu-Chr1 54045259 54045576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04669 13 84 WRKY Transcription Factor Family AT4G12020 43.056 2.34e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g04669 PAH 5.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04669 K11644 - ming:122076613 101.293