Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04664 ATGTCGAGCGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGCGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTTTGTGGTGCAGATGTTGCTCTCGTTGTATTTTCACCTGGCGAGAAGGTATTTTCCTTTGGTCACCCTGACGTTGATACGGTCATAGATCGTTATCTCTCACATGTCCCACCTCAAAACAATACCACCATGCAATTTATTGAGGCTCACCGTAGCGCTAACCTGCGTGAACTCAATACTCAGTTGACTCAAATCAACAATGCGTTGGACATTGAGAAGAGGCGTAATGATGAGCTGACTCACATGCGCAAGAATGCTGAGACTCAATATTGGTGGGCTTGTCCCGTTGATGGGATGAATAGAGCTCAACTTGAATTATTCAAGAAGGCTCTGGAGGAGCTTAAAAAGGTCATTGCTCAACATTCTGATAGGCTTGTAATTCAGGGTGTTCCTACTCCAACCCTGCCATTTTTTGTTGGAAATGGTTCATCGTCCAACATGCCGGTCCATCATCAGCCAAATCCTCAACAAGCTCAGATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGcaacctcatttatttggtttcaacaatatgggaggaggaggaggaggatatGGGCCATCTGGATTCTTTTGA 717 0.4254 MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPDVDTVIDRYLSHVPPQNNTTMQFIEAHRSANLRELNTQLTQINNALDIEKRRNDELTHMRKNAETQYWWACPVDGMNRAQLELFKKALEELKKVIAQHSDRLVIQGVPTPTLPFFVGNGSSSNMPVHHQPNPQQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGGYGPSGFF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04664 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 Gene3D - 88 171 - -
Tsu01g04664 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Tsu01g04664 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 PANTHER MADS BOX PROTEIN 7 181 - -
Tsu01g04664 238 CDD MADS_MEF2_like 9 79 IPR033896 GO:0000977|GO:0045944
Tsu01g04664 238 Coils Coil 148 168 - -
Tsu01g04664 238 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g04664 238 Coils Coil 99 133 - -
Tsu01g04664 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu01g04664 238 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tsu01g04664 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04664 Tsu-Chr1 54000594 54001310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04664 5 189 Type I MADS-box Gene Family AT5G60440 54.787 3.54e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g04664 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04664 - - mtr:MTR_1g105905 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04664 01 54000594 54001310 Tsu01g04664 01 54000594 54001310 ECH