Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04660 ATGCCTctgtttctctttctctgttttttgttttctagaATTGTATCCCAAGCCAAAGCAGGTGATCCTGTATCCTGTGATAACAATAGAGGAAACTACACAATCGATAGCGCCTACGACAACAACCTTAAAACCGTATTATCCAGTTTCTCTTCCCATAAACAAATTAACTATGGTTTCTACAATTTCTCATATGGTCAAGACCCCGACAAAGCATACGCCATTGGGTTGTGTCGCGGAGACCTTAACGCAAATCAATGTCTTACAAACATAAACAATTCCTTTGTTTATCTCAGACAGCAGTGTCCAAACCAAAAAGAAGCAATTGTTTGGGGTGGTGACTTCACTTTATGGTACTCAAATCGCTCGATTTTTGGGATCGTGGAAACTAGTCCTACagaatatttgatttatgaAAGGGATGCAACTGATGCAGATCAGTATAAACAAGCATTGAGTAACTTGATgacaaatttaacaaaaaaagcTGCATCAGGTGATTCTCGTCGTAAGTATGATGCAGATAGTGTGAGTGATCCTGCAAATTTTGCAACTATATATGGTTATGTTCTTTGTATGCCGGATTTGTCATCGCAACAATGCAGCGATTGTTTGGCTCAGACAATTTTGGAAATCCCAGAATGTTGTAATGGGAAGATGGGAGGAAATATTCTTAAACCAAGTTGTCGTATTAGATTTGATCCTTATCGTTTCTTCAATTCGACGATTGTGTTAGATTCAAATGCAACTCCTCCTGAACCACCGTCACTACCACCTTCACCATCCACCACCAATAGCACATCTTCAGGACACAACAAAATCCGAACCGTCATCGCCACTGCAGTACCAGTTGCTACTGTGGTTTTGTTCCTCATTTTTATTTGCATCTATTTAAGGTTCAGAAAGCTAAAACAAATGTTTGAAGCTGATAATGgagaatatgatgatgatggagaTGAAGATGAAATTACAATTGTTGAGTCATTTCAATTTAACTTTGATACCATTCGAGTTGCTACGGGTGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGTTGTTTATCGGGGTAAACTACCTGATGGACAAatgattgctgtcaaaagatTGTTAGAAGATTCCAGCCAAGGAGATGTGgaatttaaaaatgaagtacTATTAGTCGCCAAGCTTCAACATCGAAATTTAGTTAGACTACTTGGTTTTAGTTTAGAAGGGACTGAAAGGCTGCTTATTTATGaatttgttacaaataaaagtCTTGATTACTTCATATTCGATCCAATCAGGAAAGCACAATTGAATTGGAAAAAACGCTACGATATTATAAGAGGTATTGCCCGAGGTCTTCTTTATCTACATGAGGATTCTCGCTTACGAATTATACACCGTGATATCAAAGCAAGCAATATTCTCTTAGACAACGAGATGAATCCTAAGATAGCCGATTTTGGATTGGCAAGATTGTTTGTTATAGATCAAACTCAAGGAAATACAAATAGAATTGTTGGAACATATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTCTCGGTAAAATCGGATGTCTTTAGTTTTGGAGTATTGGTTCTTGAGATTATAAGTGGTCATAAGAATAGCACAAAGATTGGTCATGGAAATGATGTAGAGTATCTATTGAGCTATGCATGGAGAAGCTGGAGAGAAGGGAAAGCTACAAATATTATAGATCCATCATTAAACAACATTTCACCAAATGAAATAATGAGATGCATCCATATTGGTTTACTCTGCATTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCACTTATGCTTAATAGTaattctctcactctctcaatACCTTCAAAACCTGCATATTTTTATGGAAGTGGAACTAGAAGCTTACAAGACATGCAGTTATGGGCTGGACATATAGATTCAACAACTTCAGATGAATCAAAGAACACGGCTTCAAATACTGATCCATACCCTCGCTAG 2007 0.3503 MPLFLFLCFLFSRIVSQAKAGDPVSCDNNRGNYTIDSAYDNNLKTVLSSFSSHKQINYGFYNFSYGQDPDKAYAIGLCRGDLNANQCLTNINNSFVYLRQQCPNQKEAIVWGGDFTLWYSNRSIFGIVETSPTEYLIYERDATDADQYKQALSNLMTNLTKKAASGDSRRKYDADSVSDPANFATIYGYVLCMPDLSSQQCSDCLAQTILEIPECCNGKMGGNILKPSCRIRFDPYRFFNSTIVLDSNATPPEPPSLPPSPSTTNSTSSGHNKIRTVIATAVPVATVVLFLIFICIYLRFRKLKQMFEADNGEYDDDGDEDEITIVESFQFNFDTIRVATGDFSDSNKLGQGGFGVVYRGKLPDGQMIAVKRLLEDSSQGDVEFKNEVLLVAKLQHRNLVRLLGFSLEGTERLLIYEFVTNKSLDYFIFDPIRKAQLNWKKRYDIIRGIARGLLYLHEDSRLRIIHRDIKASNILLDNEMNPKIADFGLARLFVIDQTQGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIISGHKNSTKIGHGNDVEYLLSYAWRSWREGKATNIIDPSLNNISPNEIMRCIHIGLLCIQENVVDRPTMASVALMLNSNSLTLSIPSKPAYFYGSGTRSLQDMQLWAGHIDSTTSDESKNTASNTDPYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04660 668 CDD STKc_IRAK 349 615 - -
Tsu01g04660 668 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04660 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Tsu01g04660 668 Gene3D Phosphorylase Kinase; domain 1 312 418 - -
Tsu01g04660 668 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 657 - -
Tsu01g04660 668 Gene3D - 23 123 IPR038408 -
Tsu01g04660 668 Gene3D - 133 238 IPR038408 -
Tsu01g04660 668 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Tsu01g04660 668 SUPERFAMILY Protein kinase-like (PK-like) 328 631 IPR011009 -
Tsu01g04660 668 MobiDBLite consensus disorder prediction 249 270 - -
Tsu01g04660 668 MobiDBLite consensus disorder prediction 649 668 - -
Tsu01g04660 668 SMART serkin_6 343 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04660 668 Pfam Salt stress response/antifungal 143 234 IPR002902 -
Tsu01g04660 668 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Tsu01g04660 668 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
Tsu01g04660 668 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 657 - -
Tsu01g04660 668 Pfam Protein kinase domain 344 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04660 668 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Tsu01g04660 668 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04660 Tsu-Chr1 53978830 53981895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04660 3 629 Receptor kinase-like Gene Family AT4G21410 49.533 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04660 Pkinase 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04660 - - mtr:MTR_5g065130 909.827