Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04659 ATGGCAATCGTGTCTTGCAAGTTATcgttttccttttattattttcttcttttcattattATTGTATCTCAAACAAAAGCCCAGCCAAATTTTTTGTACAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGCACATATCAAACCAACCTCAACATCCTTTTGTCTAATCTTTCTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCTTACGGCCAAAACACCGACAAAGTAAATGCCATTGGACTTTGTAGAGGAGATGTTAAACCCGATGATTGCCGCAATTGTCTCAATGATTCAAGAGTTCTTCTAACACGGCTTTGTCCTAATCAAAAAGAAGCAATTGGTTGGTATGACTATTGCATGTTGCGCTACTCCAACCGATCAATATTTGGCATTATGGAAGGTTCGCCTACATTTTATTTGCCAAACCCTTACAATGTAACAAATGCGGATCAATTTAATCAAGTTCTTGGGAACTTGATGAAGAAACTGAAAGATAAAGCTGCATCAAGCGATGACTCTCGTTTTAAGTATGCTACGGATAATTCAACTGATGTGAATTTTCAAACCATATATGGTCTAGTGCAGTGTACACCTGATTTGTCATCGCAAGATTGCAATCGTTGTTTAGATGATGCTATATCAGAAATCCCAAGTTGTTGTAATAACAGGATGGGTGGTAGAGTTGTTAAACCAAGTTGTAATATTAGATTTGAATCATTTCTCTTCTACAATCTTACCATAGACCCAGATGAAACCtcgccaccaccaccacaagAAAAAAGCAAATCATCTCATACTACTACCATTGCCATAGTTGTGCCTACTGTTGTAGTAGTTGTTGTTCTGCTAACTTTGATCGTTTGCATATGCTTAAGGAGAAATCGCCCTAGTATGACAGGGGTAAATCTTGAAGatgatgataatgatgaagatgatgatgatattgaaatCGCTGAGTCATTGCAGTTCAACTTTGACACAATAGGAGTTGCTACAAATAACTTCTCTGAAGCTAATAAACTTGGACATGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCGAGTGGACAAgtgattgctgtcaaaagatTGTCAATAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAAAGAAAGGCTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAGCACAATTAGATTGGGCAATGCGCTACAAAATCATTGGAGGTATTGCTCGAGGACTTCTTTACTTGCACGAGGATTCTCGACTTCGTATTATACATCGTGATCTTAAATCAGCTAACGTTCTCTTGGACGAAGATATGAATGCCAAAATATCAGATTTTGGGATGGCCAGGTTGTTACTTGTTGATCAAACTCAAGTAAATACAAATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGACAATTTTCGGTAAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTTTGGAGATTTTAAGTGGCCAAAAAATTAGTCGCATTCTTCATGGACAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAACATAATAGATCCATCGTTAAACAACGGTTcacaaaatgaaataatgaGATGCATTCACGTTGGATTACTCTGTGTTCAAGAAAATTTGGTTGACAGACCAACTATGGCAACCATTGCACTCATGCTTAATAGTTATTCTTTCACTATGCCTCTACCTTTGGAGCCTGCATCTTTCATCGGCGGAATAACTAGAAGCTTTCCATACACACAATCATCTGGGGAAGATAAAGGAACAACAGGTTCACATGAATCCAAAAGTAAATCAGTAACTGAGAATTCCAGTGCTGAGTATTTGTAG 2004 0.3488 MAIVSCKLSFSFYYFLLFIIIVSQTKAQPNFLYNFCINDNGNYTANSTYQTNLNILLSNLSSNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDDCRNCLNDSRVLLTRLCPNQKEAIGWYDYCMLRYSNRSIFGIMEGSPTFYLPNPYNVTNADQFNQVLGNLMKKLKDKAASSDDSRFKYATDNSTDVNFQTIYGLVQCTPDLSSQDCNRCLDDAISEIPSCCNNRMGGRVVKPSCNIRFESFLFYNLTIDPDETSPPPPQEKSKSSHTTTIAIVVPTVVVVVVLLTLIVCICLRRNRPSMTGVNLEDDDNDEDDDDIEIAESLQFNFDTIGVATNNFSEANKLGHGGFGVVYQGKLSSGQVIAVKRLSIDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLEGKERLLIYEFVPNKSLDYFIFDPIKKAQLDWAMRYKIIGGIARGLLYLHEDSRLRIIHRDLKSANVLLDEDMNAKISDFGMARLLLVDQTQVNTNKVVGTYGYMAPEYAMFGQFSVKSDVFSFGVLVLEILSGQKISRILHGQSQEDLLSFAWRNWREGTITNIIDPSLNNGSQNEIMRCIHVGLLCVQENLVDRPTMATIALMLNSYSFTMPLPLEPASFIGGITRSFPYTQSSGEDKGTTGSHESKSKSVTENSSAEYL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04659 667 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04659 667 Pfam Protein tyrosine and serine/threonine kinase 344 607 IPR001245 GO:0004672|GO:0006468
Tsu01g04659 667 CDD STKc_IRAK 347 612 - -
Tsu01g04659 667 MobiDBLite consensus disorder prediction 638 667 - -
Tsu01g04659 667 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04659 667 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Tsu01g04659 667 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Tsu01g04659 667 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Tsu01g04659 667 Gene3D - 143 248 IPR038408 -
Tsu01g04659 667 Gene3D - 28 133 IPR038408 -
Tsu01g04659 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 646 - -
Tsu01g04659 667 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Tsu01g04659 667 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
Tsu01g04659 667 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Tsu01g04659 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 646 - -
Tsu01g04659 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Tsu01g04659 667 Gene3D Transferase(Phosphotransferase) domain 1 417 618 - -
Tsu01g04659 667 SUPERFAMILY Protein kinase-like (PK-like) 325 611 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04659 Tsu-Chr1 53951990 53975621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04659 36 625 Receptor kinase-like Gene Family AT4G21410 52.520 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04659 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04659 - - gmx:100791056 826.239