LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04658	ATGGAAACTGTTTCTTGCATgttattattttccttttattcttTGCTCCTTCTCATTAGTATTCTATCTCAAGCAAAAGCCCAGCCAAATTTTTTGTACAACTTTTGTATAAATGATAATGGCAACTACACAGCCAATAGCACATATCAAAATAACCTCAACATTCTTTTGTCCAATCTTTCTTCCAACACAGAAATCAACTATGGTTTCTACAATTTCTCTTACGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCTGATGTTTGTCGCAATTGTCTCAACGATTCAAGAGTTCTGCTTACACGTCTTTGTCCAAATCAAAAAGAAGCAATCAGTGGTTATGATAACTGCATGTTGCGCTACTCCAACCGATCAATATTTGGCATTATGGAAGGTTTTCCttcattttatttgataaatccAAACAGTGTAACTGAGGCGGATCAATTTAATCGAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCAGCATCAAGTGATGACTCTCGTTTTAAGTATGCTACAGATTATGCAACTGAtgtgaatttgaattttcaaaCCATATATGGTCTAGTGCAGTGTACACCTGATTTGTCAATGCAAGATTGCAATCGTTGTTTAGATTCTGCTATCTCAGAAATTCCAAGTTGTTGTAATAACAAGATCGGTGGTAGAGTTGTTAAACCAAGTTGTATTATTAGATATGAATGCTATCTCTTCTACGATCCTCCGCCTGTAATAGACCCAGATGAACCCTCTCCACCACAAgAAAAAAGCAAATCATGGCATACAACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGTTGTTGCTGTGCTAAGTTTCATTTGCATATGCTTAATGAGAAATCGCCACAAGGAATGGGTACATCTCAAAGAAatagatgaagatgatgatgatgataatgattatATTGAAATTGCTGATTCAATGCAATTCAACTTTGACACAATAAGAGTTGCTACAAGTAACTTTTCCGAAGCTAATAAACTTGGAAATGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCCGGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTGCTAGTTAAACTTCAACATCGAAATTTAGTCAGATTACTTGGTTTTTGTCTAGAAGGAAGGGAAAGACTGCTTGTGTATGAATTTGTTCATAATAAAAGCCTCGATTACTTTATATTTGATCCAATAAAGAAAGCAGAACTAGACTGGAAAAGGCGCTACAAAATCATTGAAGGTATTGTGAGAGGCCTTCTTTACCTTCATGAGGATTCTCAACTTCGTATTGTACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAAATATGAATGCTAAAATATCAGATTTTGGTATGGCCAGATTACTTGTTGATCAAACTCAAGTAAATACAGATAGAGTCGTTGGAACATATGGATATATGGCTCCTGAATATGTAATGTTTGGACAATTTTCAGCAAAATCGGATGTTTTTAGTTTTGGCGTACTAGTTTTGGAGATTATAAGTGGCCAAAAAATTAGCCACATTCTTCATGGGCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGAAGGGTACAATCACAGATATAATAGATCCACCATTAAACAATGCTTcacaaaatgaaataatgaGATGCATTCACATTGGTTTACTCTGTGTTCAAGAAAATTTGGTTAACAGACCAACTATGGCAAACATTGCACTCATGCTTAGTAGTTATTCCATATCTCTCCCAGTACCTTTGGAGCCTGCATCTTTTATTGATGGCAGAACCAGAAGTCTTCCAGGTCCAGACATGCAATGTGGGGACGATAATTCAGGGGCGATAAGATCAAATGAACCCACATAA	1965	0.3537	METVSCMLLFSFYSLLLLISILSQAKAQPNFLYNFCINDNGNYTANSTYQNNLNILLSNLSSNTEINYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAISGYDNCMLRYSNRSIFGIMEGFPSFYLINPNSVTEADQFNRVLGNLMKKLKEKAASSDDSRFKYATDYATDVNLNFQTIYGLVQCTPDLSMQDCNRCLDSAISEIPSCCNNKIGGRVVKPSCIIRYECYLFYDPPPVIDPDEPSPPQEKSKSWHTTIAIVVPTVVVVVAVLSFICICLMRNRHKEWVHLKEIDEDDDDDNDYIEIADSMQFNFDTIRVATSNFSEANKLGNGGFGVVYQGKLSGGQVIAVKRLSRDSGQGDIEFKNEVLLLVKLQHRNLVRLLGFCLEGRERLLVYEFVHNKSLDYFIFDPIKKAELDWKRRYKIIEGIVRGLLYLHEDSQLRIVHRDLKASNILLDENMNAKISDFGMARLLVDQTQVNTDRVVGTYGYMAPEYVMFGQFSAKSDVFSFGVLVLEIISGQKISHILHGQEDLLSFAWRNWRKGTITDIIDPPLNNASQNEIMRCIHIGLLCVQENLVNRPTMANIALMLSSYSISLPVPLEPASFIDGRTRSLPGPDMQCGDDNSGAIRSNEPT	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04658	654	Gene3D	Phosphorylase Kinase; domain 1	305	417	-	-
	Tsu01g04658	654	ProSitePatterns	Protein kinases ATP-binding region signature.	348	370	IPR017441	GO:0005524
	Tsu01g04658	654	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	6	644	-	-
	Tsu01g04658	654	SUPERFAMILY	Protein kinase-like (PK-like)	324	609	IPR011009	-
	Tsu01g04658	654	ProSiteProfiles	Gnk2-homologous domain profile.	31	134	IPR002902	-
	Tsu01g04658	654	SMART	serkin_6	342	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04658	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Tsu01g04658	654	ProSiteProfiles	Protein kinase domain profile.	342	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04658	654	MobiDBLite	consensus disorder prediction	631	654	-	-
	Tsu01g04658	654	Gene3D	Transferase(Phosphotransferase) domain 1	418	616	-	-
	Tsu01g04658	654	ProSiteProfiles	Gnk2-homologous domain profile.	140	250	IPR002902	-
	Tsu01g04658	654	Pfam	Salt stress response/antifungal	152	246	IPR002902	-
	Tsu01g04658	654	Pfam	Salt stress response/antifungal	36	131	IPR002902	-
	Tsu01g04658	654	CDD	STKc_IRAK	348	609	-	-
	Tsu01g04658	654	Pfam	Protein kinase domain	343	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04658	654	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	644	-	-
	Tsu01g04658	654	Gene3D	-	28	133	IPR038408	-
	Tsu01g04658	654	Gene3D	-	143	250	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04658	Tsu-Chr1	53948301	53951267	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g04658	1	623	Receptor kinase-like Gene Family	AT4G21410	49.011	0.0	575

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu01g04658		Pkinase	4.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04658	-		-	gmx:100791056	811.601