Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04657 ATGCTTTTCTTGAAACATAGCTTTCTCTTCCTGTTTCTGTTTGGATGTCTTACTTCATCATCATTAGCATCTCCAAATTACAATGATATTTACTGTCCAAACAACAAAACCTATGAACCCAACAACACAATATTCAATACAAATCTCAATGTCCTCCTCTCCACTCTTGTCAGCAACGCCACCCAAGGCGGCGCTGATTCCTACTCCTCCTTCATGGGTTTTGGAAACAACAACGCCGTCAATGGTGCTTTCCTCTGTCGCGGAGACGTTAACTCCACTACATGTATGGATTGTGTAACCACTGCAGCCAAGGATATAACAAACCGCTGTCCTAACCAAACAGAGTCAATTATATGGTACGATGAATGTATGCTGCGTTATACTAACCGTTTCTTTGCTCCCACTAGTATTGTCCCAAGAGCGAATATGAACAACGGCAAAAACATCTCTACCAGCTCGAAATTGGATAGCTTTAATGAAATGTTGTTAAGTTTCTTGGGAAGTTTGGCTGCACAAGCTGCAAATTCTCAGACATCAAAGCAATTTGCGACCGGTGAACCAAACTTAAGCATAAATGGCGCTTCGGAGAAGGGGATTACGGTTTATGGATTGGCACAGTGTTTGCCTGGTTTGACGAATGTTCAGTGTGAGGGATGTTTGGTAAATGCGTCGAGAACTCTATTGACGTGTTGTGAAGGAAAACAAGGTGCTAGAGCCTTGCTTGCATGGTGTAATATCAGATATGATTTGTACCGGTTTTACAATCCAACACCAGGAAAGAACAAGTCCAAGTCAAAAACAAGGGCCGTCTTGATTGCTGTTATTGTCACCGGGTCAACAATTCTGTTTTGTTTGGGCTGCTATTTCCTCATGAGAAGATCAAGCTGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTAATGAAAGTTCCACGTTAGAATCGCTACAATTTAATTTGGCGACCATCGAAGCAGCCACAAAGAAATTTTCACCTGAGAATAAAATAGGCAAGGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATAGATGGAAGGGAAATAGCTGTAAAAAAGTTATCTCAAACTTCAGGACAAGGTGCACTAGAGTTCAAAAATGAGGTTTTACTAATAGCCAAACTTCAACATAGAAATTTGGTGACCTTAATAGGTTTTTGCTTGAAAGAGCAAGAGAAAATGCTGATTTATGAATACGTGTCCAACAAAAGTCTCGATTACTTTTTATTTGATCGCAACAAGTCCAGATTATTACACTGGTTTGAGCGTTACAAAATCATAGAAGGAATTGCACACGGTATACATTATCTACACGAACATTCAAGATTGAAGATTATTCATCGTGATCTTAAACCGAGTAATATATTGTTAGATGATAACATGAATCCTAAAATATCTGATTTTGGTATGGCAAGAATGGTGGCTATAGATCAAGATCGAGGAAGTACAAATAGAATTGTTGGAACATAtGGCTATATGTCTCAGGAATATGCGATGCATGGCCAATTTTCAGAAAAATCAGACGTCTTCAGTTTTGGAGTCATAATTTTGGAGATAATTAGTTCAAAAAAGAATGCTCGTTCTCTTTTATCAAGTAACACCGATGACCTCTTGAGTCATGCTTGGAGACACTGGCGGGATCAAACACCATTAGAACTAATAGACCAAGATATAAGAGAATCATGCAACCATAATGAAGTTGTTAAATGCATTCAAATTGGTTTATCATGTGTTCAAGAGAAACCTGATGATAGACCTTCAATGGCAAATGTTGTTTCATATCTGACTAGCCCATCAGCTGAGTTGCCAGTTCCAGGAGAACCAACAAAGCCTATGCATAGTGGAATACTGCAAATGGCAGTAGCAGGGGAGTTGAGTTCAGCTTCTATATCAACAGTCAATCAAATGTCTTCATCAGTGGTACCAAGTTCTACATTCTCTGACAATGCTTAG 1974 0.3896 MLFLKHSFLFLFLFGCLTSSSLASPNYNDIYCPNNKTYEPNNTIFNTNLNVLLSTLVSNATQGGADSYSSFMGFGNNNAVNGAFLCRGDVNSTTCMDCVTTAAKDITNRCPNQTESIIWYDECMLRYTNRFFAPTSIVPRANMNNGKNISTSSKLDSFNEMLLSFLGSLAAQAANSQTSKQFATGEPNLSINGASEKGITVYGLAQCLPGLTNVQCEGCLVNASRTLLTCCEGKQGARALLAWCNIRYDLYRFYNPTPGKNKSKSKTRAVLIAVIVTGSTILFCLGCYFLMRRSSWKKYKTLMRENFGNESSTLESLQFNLATIEAATKKFSPENKIGKGGFGEVYKGILIDGREIAVKKLSQTSGQGALEFKNEVLLIAKLQHRNLVTLIGFCLKEQEKMLIYEYVSNKSLDYFLFDRNKSRLLHWFERYKIIEGIAHGIHYLHEHSRLKIIHRDLKPSNILLDDNMNPKISDFGMARMVAIDQDRGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVIILEIISSKKNARSLLSSNTDDLLSHAWRHWRDQTPLELIDQDIRESCNHNEVVKCIQIGLSCVQEKPDDRPSMANVVSYLTSPSAELPVPGEPTKPMHSGILQMAVAGELSSASISTVNQMSSSVVPSSTFSDNA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04657 657 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04657 657 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 652 - -
Tsu01g04657 657 Gene3D - 140 253 IPR038408 -
Tsu01g04657 657 Gene3D - 26 132 IPR038408 -
Tsu01g04657 657 Pfam Protein tyrosine and serine/threonine kinase 334 602 IPR001245 GO:0004672|GO:0006468
Tsu01g04657 657 ProSiteProfiles Gnk2-homologous domain profile. 26 132 IPR002902 -
Tsu01g04657 657 CDD STKc_IRAK 337 603 - -
Tsu01g04657 657 ProSiteProfiles Gnk2-homologous domain profile. 137 253 IPR002902 -
Tsu01g04657 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Tsu01g04657 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 652 - -
Tsu01g04657 657 SUPERFAMILY Protein kinase-like (PK-like) 314 619 IPR011009 -
Tsu01g04657 657 Pfam Salt stress response/antifungal 152 250 IPR002902 -
Tsu01g04657 657 Pfam Salt stress response/antifungal 32 129 IPR002902 -
Tsu01g04657 657 Gene3D Phosphorylase Kinase; domain 1 293 406 - -
Tsu01g04657 657 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Tsu01g04657 657 Gene3D Transferase(Phosphotransferase) domain 1 407 609 - -
Tsu01g04657 657 ProSiteProfiles Protein kinase domain profile. 331 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04657 657 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04657 Tsu-Chr1 53943622 53946626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04657 7 612 Receptor kinase-like Gene Family AT4G05200 46.361 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04657 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04657 - - ccaj:109813299 892.878