Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04655 ATGATTTCTTCCATTTGGCTTCTGCTATACCTTCTAATTTCTCTGTTTATCACACTAAAATCCAAAGCCAACGCCCAGCTAGTTTTCCGCTACCATGAATGTAACCAAAATCACGGAAACTTCACCGATAGCAGTGCCTACAAGAACAACCGTAACACCGTATTACAACAAATATATTCCAACACAACAATAGACTACGGTTTTTTCAATTTCTCGTACGGCATTAAACCTAGCAAAGTATACGCAATTGGACTTTGTCGAGGTGATATAGAACCAGATGATTGCCGCGGATGCCTGACAACTTCCGCAGCACTTCTCACAGATCGATGTCCAATACAAAAAGAAGCAATTGGTTACTACGACTCGTGCATCTTACGCTATTCAGACGATCAAATTTTTGGCGTGCTGGATACTGCAACCAGTAATTTTTACTATATCGAACCCAAGACAGTGGTGGAAGATGCATTTAAGCAAAAACTTAATATCTTGTTGGATGAGCTTATTAGCACGGCCGCGGATGGTGACTCGCGTAAGAAGTTTGCCGAAAAGAGTGTTAAAGTAATTGATAAATCAAGTAGTAATGAGACTATATATGGTTTGGCTCAGTGTATGCCAGATTTGACAAAGCAAGATTGTAGTAGATGTTTGGATCCTGTTTCCCGAAGTCTTTCAGATATCTGTCAAGATATGAAAGGTTGTTTATATCTTGGACCAAGTTGTTCTGTTAGATATGATAttattccattttttaaatCCATAGTGAAGAACACGAAGTCACCAGCACCACAGCCACAGCCGCAGCCGCAGCCACAACCTTCGGAAGCAATCGCTCATGCACTTCCTCCTACAACCGGGAAAGGCCCACTGAAAAATGAAGATGAATTTGAAGCTGAAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCGTCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGggtatgctctctgatggacaaaatgttgCTATCAAAAGGTTGGCAATCAATTCTAATCAAGGAGAAACTGAATTTAAGAATGAAGTGTTGCTGACAGGGAAGCTTCAACATAGAAACTTAGTAAAGCTACTAGGTTTCTGTttacaaagaaaagaaagactACTAATATATGAGTTTGTCCCTAACAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAAATTTGAGTTGGGAAAGACGCTACAAAATCATAAGAGATATTGCTCGTGGTCTTCTTTATCTTCATGAAGATTCTCGATTACAAATTGTTCATCGTGATCTCAAAATAAGTAACATTTTGCTAGATGAAGAGATGAACCCAAAAATTACAGATTTTGGCATTGCAAGATTGTTTGATGCCAATCAAACTGATGGCATGACAAAGACCGTTGTTGGAACTTTTGGATATATGGCTCCAGAGTACATTAGACACGGACAATTTTCAGTCAAGTCAGATGTGTTTAGTTATGGTGTAATCATTTTAGAAATTGTTTGTGGCCGGAAAGTCATCGAGAATCGTGGCGGGGAGAACATAGAAGATCTATTAAGCATCGCATGGAGAAATTGGAAGGCAGGGACAACTTCAGATATtatagattcaatattagaccATGGTTTTaataagaatgaaaaaatgaGAAGCATTCATGTTGGATTACTTTGTGTTCAAGAAGATATAGATATGAGACCAACTATGAGTTCTGTTTTACAAATGCTTAGTAGTACCACTTACCCACTTCCTGAGCCTTCTGAACCTCCATTTTTAATGCAACCCAAAAGGGCATTATCTATAGCATTAAGTGGCCAATATACAGGTTCCACTAAGTCAACTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAAATATTTCGACACGTCTTGACTTGGAAACAGTGTTCGAGGATATGTTGAGAAGATGA 1992 0.3695 MISSIWLLLYLLISLFITLKSKANAQLVFRYHECNQNHGNFTDSSAYKNNRNTVLQQIYSNTTIDYGFFNFSYGIKPSKVYAIGLCRGDIEPDDCRGCLTTSAALLTDRCPIQKEAIGYYDSCILRYSDDQIFGVLDTATSNFYYIEPKTVVEDAFKQKLNILLDELISTAADGDSRKKFAEKSVKVIDKSSSNETIYGLAQCMPDLTKQDCSRCLDPVSRSLSDICQDMKGCLYLGPSCSVRYDIIPFFKSIVKNTKSPAPQPQPQPQPQPSEAIAHALPPTTGKGPLKNEDEFEAEAGNDLKVGDLLQFDFETVRLATSNFSDANKLGQGGFGTVYKGMLSDGQNVAIKRLAINSNQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVPNKSLDYIIFDPIKRANLSWERRYKIIRDIARGLLYLHEDSRLQIVHRDLKISNILLDEEMNPKITDFGIARLFDANQTDGMTKTVVGTFGYMAPEYIRHGQFSVKSDVFSYGVIILEIVCGRKVIENRGGENIEDLLSIAWRNWKAGTTSDIIDSILDHGFNKNEKMRSIHVGLLCVQEDIDMRPTMSSVLQMLSSTTYPLPEPSEPPFLMQPKRALSIALSGQYTGSTKSTDSGSGSQFTQGSTNISTRLDLETVFEDMLRR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04655 663 Pfam Protein kinase domain 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04655 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 285 623 - -
Tsu01g04655 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Tsu01g04655 663 MobiDBLite consensus disorder prediction 257 291 - -
Tsu01g04655 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 269 - -
Tsu01g04655 663 Gene3D Transferase(Phosphotransferase) domain 1 399 600 - -
Tsu01g04655 663 CDD STKc_IRAK 329 594 - -
Tsu01g04655 663 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Tsu01g04655 663 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 269 - -
Tsu01g04655 663 SMART serkin_6 323 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04655 663 Gene3D - 142 249 IPR038408 -
Tsu01g04655 663 Gene3D - 26 131 IPR038408 -
Tsu01g04655 663 SUPERFAMILY Protein kinase-like (PK-like) 308 622 IPR011009 -
Tsu01g04655 663 ProSiteProfiles Gnk2-homologous domain profile. 138 249 IPR002902 -
Tsu01g04655 663 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Tsu01g04655 663 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 285 623 - -
Tsu01g04655 663 Gene3D Phosphorylase Kinase; domain 1 289 398 - -
Tsu01g04655 663 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Tsu01g04655 663 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Tsu01g04655 663 ProSiteProfiles Protein kinase domain profile. 323 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04655 Tsu-Chr1 53936414 53940918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04655 37 612 Receptor kinase-like Gene Family AT4G21410 43.381 7.47e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04655 Pkinase 3.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04655 - - gmx:100787936 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04655 01 53936414 53940918 Tsu01g04655 01 53936414 53940918 ECH