LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04654	ATGCTTTCTTGGCAATGGACTCTGTTTTCACTTCTTCCTCTGTTTTTCACACTAAATTCTGAAGCAAACGACCAACTAGTTTTCCGCTACCACGCATGTAACCAAGATCTTGGAAACTTCACCAAAGGTAGTGTCTATGAGAACAACCGTGACAATGTCGTTGAACAAATATATTCCAACAAAGAAATAAACTACGGTTTCTACAATGTCTCGTATGGCGAAGAACCTGACAGAGTAAACGCAATCGGTTTCTGCAGAGGTGATGTTAATCCAACCAATTGCCGTGAATGCTTGAGAACCTCTGCAGTACTTCTAACCGATCGATGTCCATTACAGAAAGAAGCAATTGGTTACTACGATTTGTGCACCTTACGTTATTCAAACAATTCGCTATTTGGTGTCATGAAAACCGAAACAGGTTACGTTTATAATATCGAAACCAAGACATTGGTGGATGGTGTGTTTAATCAAACACTTAATGTCTTGTTGGATGAACTTAAAGGCACGGCCGCGGATGGTGACTTTCAACATAAGTTTGCTGAAAAGAGTGTTAAAGTAAATGATGAAGCTAGTAGTAATAGAAATGAGACTATATATGGTTTGGTTCAGTGTACACCAGATTTGTCTAAGGAAAAATGTACTGAATGTTTGGATTCAGCTTTGGGACAGTTTTCATATTGGTGTAAACAAATGAAAGGTTGTTTGTATCTTGGACCAAGTTGTTCGGTTAGATATGATATTACTCCTTTCTTTCAGTCCATAGTCAATAATACAGAGTCTCCAGCACCACAGCCTTCTCAAGCACTTCCTCCTGCACTTTCTCCTCAAACTGCAACTTCTGCTATCTCCATCAATACATCTACTAGCAAAgGAAAGAGCAGGAAAATAACAACGGCTATCACTATCGCTGTAGCAATTGTTGTAGCTGGCATAGTATTAGTGGGTATATGGGTTTGTTTGCGAAAGAGAAAGCCAAAACCCGAATACACGGCTGAAATTGAAGGCCAAGAGAaaaatgaagatgaagttgatgttgatgttgaagaggaagaagttgAAGCTGGTAATGACCTTAAAGTTGGGGATTTGTTGCAATTTGACTTTGCAACCATCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGATCTGTTTACAAGggTACGCTATCTAATGGACAAGATATTGCTATCAAAAGATTGGCTAACAATTCTGAGCAAGGAGAAACCGAATTTAAGAACGAAGTATTGCTGACAGGAAAACTTCAACATCGAAATTTAGTTAAACTATTAGGTTTCTGCttacaaagaaaagaaagactACTCATATATGAGTTTGTCTCCAATAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGGGCAAGTTTAAATTGGGAAAGACGATACAAAATCATAAGAGATATTGCCCGTGGTCTTCTTTATCTTCATGAAGACTCTCGATTACAAATTGTTCACCGTGATCTCAAAACAAGTAACATTCTGCTAGATGAAGAGATGAACCCAAAAATTACGGATTTTGGCATTGCAAGATTGTTTGATCCAAATCAAACTCATGGCATGACAAAGACAGTCATTGGAACTTATGGATATATGGCACCAGAGTACATTAAACATGGACAATTCTCAGTCAAATCAGATGTATTTAGTTTTGGCGTAATCATTTTAGAAATTATTTGCGGCCAGAGAAATACTGAGATTCGAGACGGGGAGAATATAGAGGATCTATTAAGCATTGCATGGAAAAATTGGAAGGCAGGGACAAGTTCAGATATTGTAGATCCAACATTAGACCAAGATTTTAACAAGAATGAAAAATTGAGATGCATACATGTTGCACTACTTTGTGTTCAAGAAGATATAGTTGTGAGACCATCTATGAGTTCCGTTTTACTAATGTTTAATAGCACCTCTTTCCCACTTCCTGAACCTTCTGAACCTCCATTCCTAATGCAACCCAAAAGGACATCTTCTATAGCATTATTAAGTGACCGATATTCAGGTCCCACAAAGTCAACTGATTCAGGATCAGTAAGCCAACTTACTCAAGGATCAACAACTAAGTCTTCAGTTACAGATCAATATTCAATAATAGATGAATGA	2148	0.3655	MLSWQWTLFSLLPLFFTLNSEANDQLVFRYHACNQDLGNFTKGSVYENNRDNVVEQIYSNKEINYGFYNVSYGEEPDRVNAIGFCRGDVNPTNCRECLRTSAVLLTDRCPLQKEAIGYYDLCTLRYSNNSLFGVMKTETGYVYNIETKTLVDGVFNQTLNVLLDELKGTAADGDFQHKFAEKSVKVNDEASSNRNETIYGLVQCTPDLSKEKCTECLDSALGQFSYWCKQMKGCLYLGPSCSVRYDITPFFQSIVNNTESPAPQPSQALPPALSPQTATSAISINTSTSKGKSRKITTAITIAVAIVVAGIVLVGIWVCLRKRKPKPEYTAEIEGQEKNEDEVDVDVEEEEVEAGNDLKVGDLLQFDFATIRLATSNFSDANKLGQGGFGSVYKGTLSNGQDIAIKRLANNSEQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVSNKSLDYIIFDPIKRASLNWERRYKIIRDIARGLLYLHEDSRLQIVHRDLKTSNILLDEEMNPKITDFGIARLFDPNQTHGMTKTVIGTYGYMAPEYIKHGQFSVKSDVFSFGVIILEIICGQRNTEIRDGENIEDLLSIAWKNWKAGTSSDIVDPTLDQDFNKNEKLRCIHVALLCVQEDIVVRPSMSSVLLMFNSTSFPLPEPSEPPFLMQPKRTSSIALLSDRYSGPTKSTDSGSVSQLTQGSTTKSSVTDQYSIIDE	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04654	715	SUPERFAMILY	Protein kinase-like (PK-like)	364	676	IPR011009	-
	Tsu01g04654	715	Gene3D	Transferase(Phosphotransferase) domain 1	454	654	-	-
	Tsu01g04654	715	CDD	STKc_IRAK	384	650	-	-
	Tsu01g04654	715	Gene3D	-	25	131	IPR038408	-
	Tsu01g04654	715	Gene3D	-	141	250	IPR038408	-
	Tsu01g04654	715	Pfam	Protein kinase domain	379	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04654	715	ProSiteProfiles	Gnk2-homologous domain profile.	136	250	IPR002902	-
	Tsu01g04654	715	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	9	708	-	-
	Tsu01g04654	715	Gene3D	Phosphorylase Kinase; domain 1	340	453	-	-
	Tsu01g04654	715	MobiDBLite	consensus disorder prediction	678	715	-	-
	Tsu01g04654	715	Pfam	Salt stress response/antifungal	33	128	IPR002902	-
	Tsu01g04654	715	Pfam	Salt stress response/antifungal	153	246	IPR002902	-
	Tsu01g04654	715	ProSiteProfiles	Protein kinase domain profile.	378	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04654	715	SMART	serkin_6	378	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g04654	715	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	499	511	IPR008271	GO:0004672\|GO:0006468
	Tsu01g04654	715	ProSiteProfiles	Gnk2-homologous domain profile.	28	131	IPR002902	-
	Tsu01g04654	715	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	9	708	-	-
	Tsu01g04654	715	ProSitePatterns	Protein kinases ATP-binding region signature.	384	406	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04654	Tsu-Chr1	53918745	53935118	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g04654	36	667	Receptor kinase-like Gene Family	AT4G21410	45.540	1.22e-179	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu01g04654		Pkinase	2.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04654	-		-	gmx:100787936	720.694