Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04648 ATGGCAATTGTGATTTTATCTTTCAAGTTatcattttacttttattatttccTCCTTCTCATTATTACTATTGTATCTCAAGTTAAAGCCCAGCCAAATTTTTTGGGCAACTATTGTATAAATGATACTGGCATCTACAAAGCCAATAGCACATATCAAAACAATCTCAACATCCTTTTGTCCAATCTCTCTACCAACACACAAATCAACTACGGTTTCTACAATTTCTCTTATGGTCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCTGATGTTTGCTGCAATTGTCTCAACGATTCAAGAGTTCTTCTAACACGTCTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACTATTGCATGTTGCGCTACTCAGACCGATCAATATTTGGCCTTATGGAACAGTTACCTTGGTTTCCTATGGAAAACGGTCAGAGTGTAACAGAGGTTGATCCATTTAATCGAGTTCTTGGGAACttgatgaagaaacttaaagaAAAAGCTGCATCAAGTAATGACTCTTGTGTTAAGTATGCTACGGATAAGGAATCTGATGCGAGCTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCGTTTCAAGATTGCTTGGATTGTTTAAATGGTGCTATCGCATATCTTCCGGTTAGCAAATATGGTGGTAGAGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTGGCGCTTCTACGATCCTCCACTTGTAGTAGACCCCGATGATACCTCTCAACCACAAGTTTTGATTTTTGCAGAAAAAAGCAGATCATCATCTCATACTACTACCATTGCCATAGGTGTATCAACTGTTGTTGTAGTTGTTGTTCTGCTAACTCTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAGTATGGCACGGTTAAATCTTGAAGGccaagagaaaaatgatgaatttgaagcTGAAGCAAGTAAGGATCTTAAAGTTGGCGATTTATTGCAATTTGACATGGAAACCGTCAAATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTATGCTCGCTAATGGACAAAATGTTGCTATCAAAAGGTTGGCAATCAATTCTAATCAAGGAGAAACCGAATTTAAGAACGAAGTATTGTTGACAGGAAAACTTCAACATCGAAATTTAGTTAAACTATTAGGTTTCTGCttacaaagaaaagaaagactACTGATATATGAGTTTGTCCCTAATAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTACAAATTTGAATTGGGAAAGACgctataaaattataaaagatatTGCCCGGGGTCTTGTTTATCTTCATGAAGATTCTCGATTACAAATTATTCACCGTGATCTCAAAATAAGTAATATTCTATTAGATGAAGAGATGAACCCAAAAATTACAGATTTTGGCATTGCAAAATTGTTTGATGCTAGTCAAACTCATGGCATGACAAAGACAGTTGTTGGAACTTTTGGATATATGGCACCAGAGTACGTTAGACATGGAAAATTTTCGATCAAATCGGATGTGTTCAGTTATGGCATAATCATTTTAGAAATAGTTTGTGGTCGGAGAATCATCAAGAATCGTGACGGGGAGTTTATAGAGGATCTATTAAGTATTGCATGGAGAAATTGGAAAGCAGGGACAATTTCAGATATTATAGATCCATTATTAGACCATGGTTGTAATAAGAATGAAAAATTGAGAAGCATCCATGTTGGACTACTTTGTGTTCAAGAAGATATAGATATGAGACCAGCTATGAGTTTGGTTTTACTAATGCTTAGTAGCATTTATTTTCCACTTCCTGAACCTTTGGCACCTCCCCTTTTAATGCAACCAAAAAGGACACTATCTAAAGTGTTAAGTGATCAATATTCAGGTCTCACGAAGTCAACTGATCCAGGATCAACAAGTAAATATTCAGTTACAGATTAA 2028 0.3457 MAIVILSFKLSFYFYYFLLLIITIVSQVKAQPNFLGNYCINDTGIYKANSTYQNNLNILLSNLSTNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCCNCLNDSRVLLTRLCPNQKEAIGWYDYCMLRYSDRSIFGLMEQLPWFPMENGQSVTEVDPFNRVLGNLMKKLKEKAASSNDSCVKYATDKESDASLNFQTIYGLVQCTPDLSFQDCLDCLNGAIAYLPVSKYGGRVVEPSCNIRYESWRFYDPPLVVDPDDTSQPQVLIFAEKSRSSSHTTTIAIGVSTVVVVVVLLTLIICICLRRNRHSMARLNLEGQEKNDEFEAEASKDLKVGDLLQFDMETVKLATSNFSDANKLGQGGFGTVYKGMLANGQNVAIKRLAINSNQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVPNKSLDYIIFDPIKRTNLNWERRYKIIKDIARGLVYLHEDSRLQIIHRDLKISNILLDEEMNPKITDFGIAKLFDASQTHGMTKTVVGTFGYMAPEYVRHGKFSIKSDVFSYGIIILEIVCGRRIIKNRDGEFIEDLLSIAWRNWKAGTISDIIDPLLDHGCNKNEKLRSIHVGLLCVQEDIDMRPAMSLVLLMLSSIYFPLPEPLAPPLLMQPKRTLSKVLSDQYSGLTKSTDPGSTSKYSVTD 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04648 675 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 660 - -
Tsu01g04648 675 SUPERFAMILY Protein kinase-like (PK-like) 340 655 IPR011009 -
Tsu01g04648 675 Pfam Salt stress response/antifungal 39 134 IPR002902 -
Tsu01g04648 675 Pfam Salt stress response/antifungal 154 246 IPR002902 -
Tsu01g04648 675 SMART serkin_6 354 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04648 675 CDD STKc_IRAK 360 628 - -
Tsu01g04648 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Tsu01g04648 675 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Tsu01g04648 675 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04648 675 Gene3D - 33 136 IPR038408 -
Tsu01g04648 675 Gene3D - 147 250 IPR038408 -
Tsu01g04648 675 Gene3D Phosphorylase Kinase; domain 1 315 429 - -
Tsu01g04648 675 Pfam Protein kinase domain 355 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04648 675 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 660 - -
Tsu01g04648 675 Gene3D Transferase(Phosphotransferase) domain 1 430 630 - -
Tsu01g04648 675 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Tsu01g04648 675 ProSiteProfiles Gnk2-homologous domain profile. 34 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04648 Tsu-Chr1 53891560 53894840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04648 9 672 Receptor kinase-like Gene Family AT4G21410 45.324 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04648 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04648 - - lang:109353867 696.812