Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04647 ATGCTTTCTTCACTTTGGCTTCTGTTTTCATttcttcctctctttttcacacAAATATCTAAAGCCAATGACCAGCTAATTCCCCGCAACTACAAATGTAACGAAATTATCGGAAACTTCACGGACGGTAGTGACTGCGGGAACAACCGTGACACGGTTTTAGCACAAATATATTCCGACAAAATAACAGACTGCGGATTCTACAATTTCTCGTACGGTGTAGACACTGACCAAGTAAACGCAATTGGACTCTGTAGAGGAGACANNNNNNNNNNNNNNNNNNNNNNNNNNGACTGCGGATTCTACAATTTCTCGTACGGTGTAGACACTGACCAAGTAAACGCAATTGGACTCTGTAGAGGAGACATTGAACCAGATGATTGCCTGAAAATGTCTGCATCATTTCTCACAAATTCGTGTCAACTAGCAAAAGAAGCAATCATTTACTATGACTTGTGCACCTTACGCTATTCAAACCATTCAATATTTGCTGTGATGGAAACTGACACCGGTAAATATTACGAAATCCAATCCAAGACAGTGATAGATGATACATTGAATCGAACACTTAATAACTTGTTGGATGAACTTAAAAGCGCGACCGCCAAAGGTGACTTGCGTAAGAAGTATGCTGAAAATTATGTTACATTAATTGACGAATCAAGTAGCAGTAATAGTAGTAACAGTGAAAACACTATACATGGTCTTGTTCAGTGTACACCAGATTTGTCTAAGCAAGACTGTACTCATTGCTTGGATTTGGCTTTAAGGGATCTTTCAAAATGGTGTAAAGACATGAAAGCATCCAATAGCACATATCAAAACAACCTCAACATCCTTTTATCCAATCTCTCTTCCAACAAACAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCGAAACACCAACAAAGTAAACGCCATTGGACTCTGTAGAGGAGATGTTAAACCCGATGTTTGCCGCAAATGTCTCAACGATTCAAGAGTTCTTCTAACACGTCTTTGTCCAAATCAAAAAGAAGCAATTGGATGGTATGATTATTGCATGTTGCGCTACTCAGACCGATCAATATTTGGCATTATGGAACAGTTCCCTTGGTTTCATATGGAAAACGGCCGGAATGTAACACAGGCGGATCAATTTGATAGAGTCCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACGGATAATGAATCTAATGTGAGCTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCATCACAAGAATGCATGGATTGTTTAAATGGTGCTATCTCATATCTTCCTGTTAGCAAATTTGGTGGTAGTGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTGGCGCTTCTACGATCCTCCGCTTGTAGTAGTCACAGATGAAACATCTCGACCACAAGAAAAAAGCAAATCATCTCAAGCTACTACTGCTGCTACTACTACCATTGCCATAGGTGTGTCAACTGTTGTAGTTCTTGTTCTGCTAAATTTGATCATTTGCATATGCTTAAGGAGAAACCGCGGGCACCATAGTATGGCAGGGTCAAATCTCGAAAAAATAGAAGACGATGATGACGATATTGAAATTTCTGAGTCATTGCTATTCAAGTTTGGCACAATAGAAGTTGCTACAAATAACTTTTCTGATGCTAATAAACTCGGACATGGTGGATTCGGAGTTGTTTATCAGGGAAAACTCTCGAGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAAATATTGAATTTAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAATGAAAGGCTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTCGATCCAATAAAGAAAACACAATTAGATTGGGAAATGCGCTACAAAATCATTGGAGGTATTGCTAAAGGGCTTCTTTACCTGCACGAGGATTCACGGCTTCGTATTATACATCGTGATCTTAAATTAGGTAACATTCTCTTGGACGAAAATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGGCTGCTACTGGTTGATCAAACTCAAGTAAATACAGATAAAGTTGTTGGAACATATGGATATATGGCTCCAGAGTATGCAATGTTTGGACAATTTTCGATAAAATCAGATGTGTTTAGTTTTGGCGTACTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAATCGCATTCTTCATGGACAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAAGGTACAATCACAAATATAATCGATCCATCATTGAACAACGGTTCACAAAATGAAATATTGAGATGCATTCACATTGGTTTACTCTGTGTTCAAGAAAATTTGATTGACAGACCAACTATGGCAACCGTTGCACTCATGCTTAGTAGTTATTCTTTCACTATGCCTCTACCTTTGGAGCCTGCATCTTTCATTGGCGGAATAACTAGAAGCTTTCCATACACACAATCATCTGGGGAGGATAAAGGAACAACAGACACTGACCAAGTAAACGCAATTGGACTCTGTAGAGGAGACATCAAACCAGATGATTGCCGTGATTGCCTGAAAACTTCTGCAGCATTTCTCACAAATTCGTGTCAACTAGCAAAAGAAGCAATCATTTACTATGACTTGTGCACCTTACGCTATTCAAACCATTCAATATTTGGTGTGATGGAAACTGACACCGGTAAATATTACGAAATCCAATCCAAGACAGTGATAGATGATACATTGAATCGAACACTTAATAACTTGTTGGATGAACTTAAAAGCGCGGCCGCCAAAGGTGACTTGCGTAAGAAGTATGCTGAAAATTATGTTACATTAATTGACGAATCAAGTAGCAGTAATAGTAGTAACAGTGAAAACACTATACATGGTCTTGTTCAGTGTACACCAGATTTGTCTAAGCAAGACTGTACTCATTGCTTGGATTTGGCTTTAAGGGATCTTTCAAAATGGTGTAAAGACATGAAAGCATGTTTGTATATAGGACCAAGTTGTTCCATTAGATATAAAATCTCTCAAATTTTTATACCCATAGTCCATGACAGTATTTCAGAGTCACCAACATCACAACCTAATTATTTTTTGACGGCATCACCACCACaacctcttttttttcttctgtcaTCATCACCACCCGAGCCGGAACCAGTTCCTTCTGCATCTCCTCCTGAAACCGCATCGCCATTGGAACCACCTCCTTCTATACctcctcttcctcctcctcctcctcctgaAACTCCATCACCAGAACCACCTTCAACTGCACCTCCCCCTGAAGCATCAATAGCGGAACCACCTCCTTCTACACCTCCTCCTCCTAATACTGCGTCACCACCGAAACCACTTCCTTCTACAACTCCTCCTGcATCGCCATCAGATCAATCACTTCCTTTGGCACCTTCTCCTAAAGCTGGAAAAGGATGGAAACTTATAACGGCCATAGTTGTCCCGGTTGTTCTTGGTGGCATAGTAGTGATTGTTGGTATATTCATTTATTGTTTAAGAGGGAGAAAACAAAGATCCACAAACACTGCTGTTGAATCTGAAGCAGCGCTATATATAACGAAGAATGGAGGTTCAGCCAGAATTACTAAAGGCCGAGAGAAATATGAAGAAGACATCTTTTACGAAGCAACAAATgaagaagaatttgaaattgaaacagAAGCTGCTAATGATCTTAAAGTTGGCGATATTTTGCAATTTGACtttgaaataatcaaatcaGCTACAAACAACTTCTCAGAATCAAATATGCTTGGTGAAGGTGGATTCGGAATTGTTTATaagggCATGCTCCCTGATGGACAAGATATTGCTATCAAAAGGTTGGCTACTAATTCTAAGCAAGGGGAAATAGAATTTGAGAATGAAGTGTTGCTGACAGGGAAGCTTCAACATAGAAACTTAGTAAAGCTACTAGGTTTCTGTttacaaagaaaagaaagactACTAATATATGAGTTTGTCCCTAACAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGAAAATTTGAATTGGGAAAGACGTTACAAAATCATAAGAGACATTGCTCGTGGTCTTGTTTATCTTCATGAAGATTCTCGATTACAAATTGTTCATCGTGATCTGAAAACAAGTAACATTCTAATAGATGATGAGATGAATCCGAAAATTACAGATTTTGGCATTGCAAGATTGTTTGATGCTAATCAAACTCATGGCATGACGAAGACCCTTGTTGGAACTTTTGGATATATGGCTCCAGAGTACATTAGACATGGAGAATTCTCAGTCAAATCAGATGTGTTTAGTTATGGTGTAATCATTTTAGAAATTGTTTGTGGCCGGAGAATCATTGAGAATCATTACAGGGAGAATACAGAGGATCTATTAAGCATTGCATGGAAAAATTGGAAGGCAGGGACAAGTTTAGATATTGTAGACCCAATATTAAGCCAAGGCTTTGAGAATGAAAAAATGAGAAGCATCCATGTTGGATTACTATGTGTTCAAGAAGATATAGATATGAGACCAACTATGAGTTCTGTTTTAACAATGCTAAATAGCACTTCTTTCCCACTTCCTGAACCTTTGGAACCTCCATTTTTAATGCAACCAAAAAGGGCATTAAGTGATCAATATTCAGGTCTCACAAAGTCATCTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAACTAAGTCCTCAGCTACAGATTAA 4860 0.3708 MLSSLWLLFSFLPLFFTQISKANDQLIPRNYKCNEIIGNFTDGSDCGNNRDTVLAQIYSDKITDCGFYNFSYGVDTDQVNAIGLCRGDXXXXXXXXXDCGFYNFSYGVDTDQVNAIGLCRGDIEPDDCLKMSASFLTNSCQLAKEAIIYYDLCTLRYSNHSIFAVMETDTGKYYEIQSKTVIDDTLNRTLNNLLDELKSATAKGDLRKKYAENYVTLIDESSSSNSSNSENTIHGLVQCTPDLSKQDCTHCLDLALRDLSKWCKDMKASNSTYQNNLNILLSNLSSNKQINYGFYNFSYGRNTNKVNAIGLCRGDVKPDVCRKCLNDSRVLLTRLCPNQKEAIGWYDYCMLRYSDRSIFGIMEQFPWFHMENGRNVTQADQFDRVLGNLMKKLKEKAASSNDSRVKYATDNESNVSLNFQTIYGLVQCTPDLSSQECMDCLNGAISYLPVSKFGGSVVEPSCNIRYESWRFYDPPLVVVTDETSRPQEKSKSSQATTAATTTIAIGVSTVVVLVLLNLIICICLRRNRGHHSMAGSNLEKIEDDDDDIEISESLLFKFGTIEVATNNFSDANKLGHGGFGVVYQGKLSSGQVIAVKRLSRDSGQGNIEFKNEVLLLAKLQHRNLVKLLGFCLEGNERLLIYEFVPNKSLDYFIFDPIKKTQLDWEMRYKIIGGIAKGLLYLHEDSRLRIIHRDLKLGNILLDENMNAKISDFGMARLLLVDQTQVNTDKVVGTYGYMAPEYAMFGQFSIKSDVFSFGVLVLEIISGQKINRILHGQSQEDLLSFAWRNWREGTITNIIDPSLNNGSQNEILRCIHIGLLCVQENLIDRPTMATVALMLSSYSFTMPLPLEPASFIGGITRSFPYTQSSGEDKGTTDTDQVNAIGLCRGDIKPDDCRDCLKTSAAFLTNSCQLAKEAIIYYDLCTLRYSNHSIFGVMETDTGKYYEIQSKTVIDDTLNRTLNNLLDELKSAAAKGDLRKKYAENYVTLIDESSSSNSSNSENTIHGLVQCTPDLSKQDCTHCLDLALRDLSKWCKDMKACLYIGPSCSIRYKISQIFIPIVHDSISESPTSQPNYFLTASPPQPLFFLLSSSPPEPEPVPSASPPETASPLEPPPSIPPLPPPPPPETPSPEPPSTAPPPEASIAEPPPSTPPPPNTASPPKPLPSTTPPASPSDQSLPLAPSPKAGKGWKLITAIVVPVVLGGIVVIVGIFIYCLRGRKQRSTNTAVESEAALYITKNGGSARITKGREKYEEDIFYEATNEEEFEIETEAANDLKVGDILQFDFEIIKSATNNFSESNMLGEGGFGIVYKGMLPDGQDIAIKRLATNSKQGEIEFENEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVPNKSLDYIIFDPIKRENLNWERRYKIIRDIARGLVYLHEDSRLQIVHRDLKTSNILIDDEMNPKITDFGIARLFDANQTHGMTKTLVGTFGYMAPEYIRHGEFSVKSDVFSYGVIILEIVCGRRIIENHYRENTEDLLSIAWKNWKAGTSLDIVDPILSQGFENEKMRSIHVGLLCVQEDIDMRPTMSSVLTMLNSTSFPLPEPLEPPFLMQPKRALSDQYSGLTKSSDSGSGSQFTQGSTTKSSATD 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04647 1619 SMART serkin_6 568 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04647 1619 SMART serkin_6 1295 1570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04647 1619 SUPERFAMILY Protein kinase-like (PK-like) 1280 1592 IPR011009 -
Tsu01g04647 1619 ProSiteProfiles Gnk2-homologous domain profile. 938 1055 IPR002902 -
Tsu01g04647 1619 SUPERFAMILY Protein kinase-like (PK-like) 551 838 IPR011009 -
Tsu01g04647 1619 PRINTS Proline rich extensin signature 1129 1146 - -
Tsu01g04647 1619 PRINTS Proline rich extensin signature 1069 1081 - -
Tsu01g04647 1619 PRINTS Proline rich extensin signature 1110 1126 - -
Tsu01g04647 1619 PRINTS Proline rich extensin signature 1148 1173 - -
Tsu01g04647 1619 PRINTS Proline rich extensin signature 1088 1109 - -
Tsu01g04647 1619 ProSitePatterns Protein kinases ATP-binding region signature. 1301 1323 IPR017441 GO:0005524
Tsu01g04647 1619 MobiDBLite consensus disorder prediction 1589 1619 - -
Tsu01g04647 1619 Pfam Protein tyrosine and serine/threonine kinase 572 769 IPR001245 GO:0004672|GO:0006468
Tsu01g04647 1619 ProSiteProfiles Gnk2-homologous domain profile. 255 358 IPR002902 -
Tsu01g04647 1619 Coils Coil 183 203 - -
Tsu01g04647 1619 ProSiteProfiles Gnk2-homologous domain profile. 28 162 IPR002902 -
Tsu01g04647 1619 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Tsu01g04647 1619 ProSiteProfiles Gnk2-homologous domain profile. 364 471 IPR002902 -
Tsu01g04647 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Tsu01g04647 1619 MobiDBLite consensus disorder prediction 1086 1176 - -
Tsu01g04647 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1416 1428 IPR008271 GO:0004672|GO:0006468
Tsu01g04647 1619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 879 1069 - -
Tsu01g04647 1619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 98 263 - -
Tsu01g04647 1619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 268 871 - -
Tsu01g04647 1619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1266 1584 - -
Tsu01g04647 1619 ProSiteProfiles Protein kinase domain profile. 568 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04647 1619 Gene3D Phosphorylase Kinase; domain 1 532 643 - -
Tsu01g04647 1619 Gene3D Phosphorylase Kinase; domain 1 1257 1370 - -
Tsu01g04647 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 879 1069 - -
Tsu01g04647 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 89 - -
Tsu01g04647 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 871 - -
Tsu01g04647 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1266 1584 - -
Tsu01g04647 1619 Gene3D Transferase(Phosphotransferase) domain 1 644 845 - -
Tsu01g04647 1619 Gene3D Transferase(Phosphotransferase) domain 1 1371 1570 - -
Tsu01g04647 1619 Pfam Protein kinase domain 1296 1561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04647 1619 Pfam Salt stress response/antifungal 268 355 IPR002902 -
Tsu01g04647 1619 Pfam Salt stress response/antifungal 104 159 IPR002902 -
Tsu01g04647 1619 Pfam Salt stress response/antifungal 871 929 IPR002902 -
Tsu01g04647 1619 Pfam Salt stress response/antifungal 185 264 IPR002902 -
Tsu01g04647 1619 Pfam Salt stress response/antifungal 374 467 IPR002902 -
Tsu01g04647 1619 Pfam Salt stress response/antifungal 954 1051 IPR002902 -
Tsu01g04647 1619 Gene3D - 942 1054 IPR038408 -
Tsu01g04647 1619 Gene3D - 172 268 IPR038408 -
Tsu01g04647 1619 Gene3D - 269 357 IPR038408 -
Tsu01g04647 1619 Gene3D - 856 931 IPR038408 -
Tsu01g04647 1619 Gene3D - 366 471 IPR038408 -
Tsu01g04647 1619 Gene3D - 92 161 IPR038408 -
Tsu01g04647 1619 ProSiteProfiles Protein kinase domain profile. 1295 1581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04647 1619 MobiDBLite consensus disorder prediction 1085 1184 - -
Tsu01g04647 1619 ProSiteProfiles Gnk2-homologous domain profile. 825 932 IPR002902 -
Tsu01g04647 1619 MobiDBLite consensus disorder prediction 1575 1619 - -
Tsu01g04647 1619 CDD STKc_IRAK 1301 1566 - -
Tsu01g04647 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 98 263 - -
Tsu01g04647 1619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 89 - -
Tsu01g04647 1619 CDD STKc_IRAK 574 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04647 Tsu-Chr1 53879168 53890852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04647 269 852 Receptor kinase-like Gene Family AT4G21410 51.461 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04647 Pkinase 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04647 - - gmx:100782800 748.814