Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04646 ATGACAACTCGTAGTAGGAAAAGTATTACCCTAATCAGAGGTATCACCTTTAAGTATTCTAAGGAAGGAGAAGAATACCCACTTCTTGAGAATTACTCATTGACACTCTTTGAGATTCGGTGGAAATTGCTCCGGTGGTCATTCCGGAAGATATTGCTAGGATTGGAGTTGATTCTTCATAGTAATCCAACCAAGCGTGCAAATTTGAATTGGGAAAGACGCTACAAAATCATAAAAGATATTGTTCGTGGTCTTGTTTATCTTCATGAAGATTCTCGATTACAAATTGTTCACCGTGATCTCAAAGTAAGTAACATTCTACTAGATGAAGAGATGAATCCAAAAATTACAGATTTTGGCATTGCAAGATTGTTTGATGCCAATCAAACTCATGGCATGACAAAGACCGTTATTGGGACTTTTGGATATATGGCACCAGAGTACATTAGAGACGGACAATTTTCAGTCAAGTCAGATGTGTACAGTTTTGGTGTAATCATTTTAGAAATTGTCTGTGGGAGGAGAATTATTGAGAATCATGGCGCGGAGAATATAGAGAATCTATTAAGCATCACATGGAAAAATTGGAAGGCAGGGACAAGTTCAGATATTGTAGATCCAATATTAGACAAAGATTTTAATAGGAATGAGAAAATGAGAAGCATCCATGTTGGATTACTTTGTGTTCAAGAAGATATAGCTATGAGACCAGCTATGAGTTTGGTTTTACTAATGCTTAATAGCACCTCTTACCCACTTCCTGAACCTTTGGAACCTCCATTTTTAATGCAACCAAAAAGGGCATTATCTGTAGTGTTAAGTGACCAATTTACAGGTTTCACAAAGTCAACTGATTCAGGATCAGGAAGCCAATTTACTCAAGGATCAACAACTAAGTCTTCAGTTACACTTACAGATTACTGTTCTGCTGAATATTTGTGA 942 0.3673 MTTRSRKSITLIRGITFKYSKEGEEYPLLENYSLTLFEIRWKLLRWSFRKILLGLELILHSNPTKRANLNWERRYKIIKDIVRGLVYLHEDSRLQIVHRDLKVSNILLDEEMNPKITDFGIARLFDANQTHGMTKTVIGTFGYMAPEYIRDGQFSVKSDVYSFGVIILEIVCGRRIIENHGAENIENLLSITWKNWKAGTSSDIVDPILDKDFNRNEKMRSIHVGLLCVQEDIAMRPAMSLVLLMLNSTSYPLPEPLEPPFLMQPKRALSVVLSDQFTGFTKSTDSGSGSQFTQGSTTKSSVTLTDYCSAEYL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04646 313 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04646 313 Pfam Protein kinase domain 68 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04646 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Tsu01g04646 313 SMART serkin_6 6 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04646 313 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 62 279 - -
Tsu01g04646 313 SUPERFAMILY Protein kinase-like (PK-like) 59 278 IPR011009 -
Tsu01g04646 313 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 62 279 - -
Tsu01g04646 313 Gene3D Transferase(Phosphotransferase) domain 1 54 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04646 Tsu-Chr1 53873418 53877690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04646 62 264 Receptor kinase-like Gene Family AT4G23230 52.709 4.37e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04646 Pkinase 3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04646 - - gmx:100789471 293.893