Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04645 ATGAAAATTATGATTGTATCTTGCAAGttatcattttccttttattattttctccttcttctcaTTATTACTATTGTCTCTCAAGCTAAAGCCCAGCCAAATTTTTTGGACAACTTTTGTATAAACAATCATGGCAACTACACAGCCAAAAGCACATATCAAAACAACCTCAACATCCTTTTATCCAATCTCTCTTCCAACAAACAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACAACGACAAAGTAAACGCCATTGGACTCTGTAGAGGAGATGTTAAACCCGATGTTTGCCGCAAATGTCTCAACGATTCAAGAGTTCTTCTAACAAGTCTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACGATTGCATGTTGCGCTACTCGGACCGATCAATATTTGGCCTTATGGAACAAACACCTTGGTTTCATATGGAAAACAGTCGGAATGCAACACAGGTGGATCAATTTAATAGAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACGGATAATGAATCTGATGTGAGCTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCGTTTCAAGATTGCTTGGATTGTTTAAATGGTGCTATCGCATATCTTCCAATTAGCAAATTTGGCGGTAGAGTTGTTGAACCAAGTTGTAATGTTAGATATGAATCCTATCCCTTCTACAATCCTCCGCTTGTAGTAGTCCCAGATGAAACATCTCGACCACAAGAAAAAAGCAAATCATCTCATACTGCTACTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGTTCTTGTTCTGCTAAATTTGATCATTTGCATATGCTTAAGGAGAATAAGGAGAAATCGCCGGCACCATAGTATGGCCGGGTCAAATCTCGAAGAAATAGAAGATGGTGATGACGATATTGAAATTTCTGAGTCATTGCTATTCAAGTTTGGCACAATAGAAGTTGCTACAAATAACTTTTCTGATGCTAATAAACTTGGACATGGCGGATTTGGAGTTGTTTATCAGGGAAAACTCTCGAGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGCTATTGAATTTAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAATGAAAGGCTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAACACAATTAGATTGGGAAATGCGCTACAAAATCATTGGAGGTATTGCTAAAGGGCTTCTTTACCTGCACGAGGATTCACGGCTTCGTATTATACATCGTGATCTTAAATTAGGTAACATTCTCTTGGACGAAAATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGGCTGCTACTTGTTGATCAAACTCAAGTAAATACAGATAAAATTGTTGGAACATATGGATATATGGCTCCTGAGTATGCTATGTTTGGACAATTTTCGATAAAATCAGATGTTTTTAGTTTTGGCGTACTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAATCGCATTCTTCATGGACAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAAGGTACAATCACAAATATAATCGATCCATCATTGAACAACGGTTcacaaaatgaaataatgaGATGCATTCACATTGGTTTACTCTGTGTTCAAGAAAATTTGATTGACAGACCAACTATGGCAACCGTTGCACTCATGCTTAGTAGTTATTCTTTCACTATGCCTCTACCTTTGGAGCCTGCATCTTTCATCGGCGGAATAACTAGAAGCTCTCCATACACACAATCATCTGGGGAAGATAAAGGAACAACAGGTTCACATGAATCCAAAAGTAAATCAGTAAATGAGAATTCCAGTGCTGAGTATTTCTAG 2028 0.3634 MKIMIVSCKLSFSFYYFLLLLIITIVSQAKAQPNFLDNFCINNHGNYTAKSTYQNNLNILLSNLSSNKQINYGFYNFSYGQNNDKVNAIGLCRGDVKPDVCRKCLNDSRVLLTSLCPNQKEAIGWYDDCMLRYSDRSIFGLMEQTPWFHMENSRNATQVDQFNRVLGNLMKKLKEKAASSNDSRVKYATDNESDVSLNFQTIYGLVQCTPDLSFQDCLDCLNGAIAYLPISKFGGRVVEPSCNVRYESYPFYNPPLVVVPDETSRPQEKSKSSHTATTTIAIVVPTVVVVLVLLNLIICICLRRIRRNRRHHSMAGSNLEEIEDGDDDIEISESLLFKFGTIEVATNNFSDANKLGHGGFGVVYQGKLSSGQVIAVKRLSRDSGQGAIEFKNEVLLLAKLQHRNLVKLLGFCLEGNERLLIYEFVPNKSLDYFIFDPIKKTQLDWEMRYKIIGGIAKGLLYLHEDSRLRIIHRDLKLGNILLDENMNAKISDFGMARLLLVDQTQVNTDKIVGTYGYMAPEYAMFGQFSIKSDVFSFGVLVLEIISGQKINRILHGQSQEDLLSFAWRNWREGTITNIIDPSLNNGSQNEIMRCIHIGLLCVQENLIDRPTMATVALMLSSYSFTMPLPLEPASFIGGITRSSPYTQSSGEDKGTTGSHESKSKSVNENSSAEYF 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04645 675 Pfam Protein tyrosine and serine/threonine kinase 353 562 IPR001245 GO:0004672|GO:0006468
Tsu01g04645 675 SUPERFAMILY Protein kinase-like (PK-like) 332 619 IPR011009 -
Tsu01g04645 675 MobiDBLite consensus disorder prediction 641 675 - -
Tsu01g04645 675 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Tsu01g04645 675 Pfam Salt stress response/antifungal 154 249 IPR002902 -
Tsu01g04645 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Tsu01g04645 675 SMART serkin_6 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04645 675 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Tsu01g04645 675 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 654 - -
Tsu01g04645 675 CDD STKc_IRAK 355 619 - -
Tsu01g04645 675 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
Tsu01g04645 675 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 654 - -
Tsu01g04645 675 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Tsu01g04645 675 Gene3D - 33 137 IPR038408 -
Tsu01g04645 675 Gene3D - 144 251 IPR038408 -
Tsu01g04645 675 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Tsu01g04645 675 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Tsu01g04645 675 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04645 Tsu-Chr1 53868090 53871775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04645 9 633 Receptor kinase-like Gene Family AT4G21410 50.309 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04645 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04645 - - gmx:100782800 754.592