Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04644 ATGGCTTCCAACATCAAAGTATTAGTCTTCTTCCTCTTAACCCTTTTAACCATCTTCCTCAATTCTTCAACTTCTTATGCACAAGACCCCAATTTTCTCTATCAAGTttgttcaaaaaacaaattcacaTCAAACAGCACCTACCAAATAAACCTTAAAACCCTCTTATCTTCCTTATCTTCCAAAGCAATCAATCAAAACACCCTATTCTTCAACAACACCATAACCGGAAAAAATCATTCAGAAACAGCTTATGGACTATTCATGTGCAGAGGTGACATCCCTTCCAACCTATGCGCATCATGCGTTGGAAACGCAACAAAAAGACTTTCCACAAACAAAGAATGCTATGTTTCTGTTACAGCAGTTATGTGGTACGATGAATGCATGGTTCGGTACTCCGACAACTCATTCTTTTCGACAGTGGCAGAAAGACCTGGCTATGTTCTCGCAAGTCCGACCAATATGACAAACCAAGAAAGTTTCAACCGTTTGTTGTATGAGACATTGAACAAAACTTCAGATGAAGCTGCTGCTAATTCTTTGAAGAAATTTGCTACAAAAGAAGCGAAAATATCTATATTTCAGAACCTTTATTGTTTAGCTCAGTGTACACCTGATATTGATGAAAGAGAGTGTAGAAGTTGTCTTTATGGTTTGATAAATTCTGACCTTCCAAGGTGTTGTGCAGGAACTCAAGGTGGCAGAGTTTTATATCCTAATTGTGTTATCAGGTTTGAAATTTATCCTTTCTATCGTTCTCTTACTGCCCCAACTCCAGCTCCTGCAGGACTCGTTCCATCAGCTAATTCTGCAGGTAAGATTTTGTTTATCAAAAAGGAGATATCAAAAGATAAGAACTTAAAGATATGCACGGTCACGGTCGGTGTAAAACCGTTTTACACAGACATGCAACGAAAATCCTTCAATTTTGAGATTACCACTTTAGAGGGGTTGCAATTCGATTTAGCTACTATTTCTAGAGCAACAAACAATTTCTCACCCGATAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGggAACACTTCCTAATGGACAAGAAATAGCTGTGAAGAGACTATCCAAAACTTCTGGCCAAGGAGCAGAAGAATTCAAAAATGAAGTGATGTTAATAGCCAAACTTCAACATAGAAATTTGGTGAGGTTAATAGGATTTTGCCttgaagatcaagaaaagatACTTGTTTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATCCTGAAAAACAAAGGCTGTTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGGTTGCTCGAGGCATTAAATATCTTCACGAAGATTCTAGGCTTAAAATTATTCATCGTGATCTCAAAGCTAGCAACGTATTGTTGGATGGAGATATGAATCCAAAAATCTCCGACTTTGGCATGGCAAAATTATTCGGAGTGGATCAAACTCAAGGAAATACCAGTAGAATAGTAGGCACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGAGTTCTCTATTAAGTCTGATGTATACAGTTTTGGAGTCCTCGTTATGGAGATTATAAGTGGAAAGAAGAACAGCTCTTTCTACGAAACAGGTGTTGCTGAGGATTTAGTGAGCTATGTGAGTAAAGAAAAGTGTAATTTTGTGCTTCTTGAGTTTATTTATTCTTTCTTACTGTATTTCATTGTAATCACATCATAA 1728 0.3669 MASNIKVLVFFLLTLLTIFLNSSTSYAQDPNFLYQVCSKNKFTSNSTYQINLKTLLSSLSSKAINQNTLFFNNTITGKNHSETAYGLFMCRGDIPSNLCASCVGNATKRLSTNKECYVSVTAVMWYDECMVRYSDNSFFSTVAERPGYVLASPTNMTNQESFNRLLYETLNKTSDEAAANSLKKFATKEAKISIFQNLYCLAQCTPDIDERECRSCLYGLINSDLPRCCAGTQGGRVLYPNCVIRFEIYPFYRSLTAPTPAPAGLVPSANSAGKILFIKKEISKDKNLKICTVTVGVKPFYTDMQRKSFNFEITTLEGLQFDLATISRATNNFSPDNKIGKGGFGEVYKGTLPNGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEDQEKILVYEYVPNKSLDHFLFDPEKQRLLDWTRRYKIIGGVARGIKYLHEDSRLKIIHRDLKASNVLLDGDMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSIKSDVYSFGVLVMEIISGKKNSSFYETGVAEDLVSYVSKEKCNFVLLEFIYSFLLYFIVITS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04644 575 Pfam Salt stress response/antifungal 154 248 IPR002902 -
Tsu01g04644 575 Pfam Salt stress response/antifungal 37 135 IPR002902 -
Tsu01g04644 575 SMART serkin_6 333 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04644 575 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Tsu01g04644 575 ProSiteProfiles Gnk2-homologous domain profile. 30 138 IPR002902 -
Tsu01g04644 575 Pfam Protein tyrosine and serine/threonine kinase 336 550 IPR001245 GO:0004672|GO:0006468
Tsu01g04644 575 CDD STKc_IRAK 339 533 - -
Tsu01g04644 575 SUPERFAMILY Protein kinase-like (PK-like) 314 538 IPR011009 -
Tsu01g04644 575 Gene3D - 147 251 IPR038408 -
Tsu01g04644 575 Gene3D - 29 138 IPR038408 -
Tsu01g04644 575 ProSiteProfiles Protein kinase domain profile. 333 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04644 575 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 553 - -
Tsu01g04644 575 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Tsu01g04644 575 Gene3D Transferase(Phosphotransferase) domain 1 409 565 - -
Tsu01g04644 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Tsu01g04644 575 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 553 - -
Tsu01g04644 575 Gene3D Phosphorylase Kinase; domain 1 296 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04644 Tsu-Chr1 53834267 53858862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04644 1 552 Receptor kinase-like Gene Family AT4G05200 51.652 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04644 PK_Tyr_Ser-Thr 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04644 - - mtr:MTR_1g105615 694.115