Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04643 ATGGCCTCTTTCCACCCGGTCTTTCTCTTTATCCTTGTTTGCTTCATCAATTTCGCAATCACTAATGCACAGAACGATAATATTATCTCGGTGTCTTGCTCAACCATCAACAAAACCACTCCAAATAGCCCCTTCCAGTTGAATCTCAAGACCCTCCTCACAGATTTATCTTCAAACGCCACTGCTAACAAGGAATTCTATAACACTATAGTAGAAGGCAAAAACCACTCGTCTGATACAGTCTATGGTCAGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTACAATTTATCCTCAAACCCATTGAACTATGATTGTTCCTTTTCCAAAGAGGTGGTGATTCAGTATGACGAGACACACGAATGCATGGTCCGATATTCCAACAAATCTTTCTTCTCCCCTACTCACTTTCGTTCACTTTCTAGCAGCTGCTCCTCTGTTAATGTGTCCAACCAGGCAGTATTCGAGCGTTTAGTTTTCAAAACCTTGAATGTTGTGGCAGATGAGACAGCCAAtttttcaattggcatcaaGAAGTATGCCACAAAGGAAGCAACCATATCTGAATTTCAACACCTATATTTTCAAGCTCAGTGCACACCAGACCTGTCACCGCAAGATTGCAGGAAATGTCTGAATGTTATCATAACGGACGTTCTTCAGATCTGTAAAAATAACAACCCAGGGGTAGGGAAGTCTGAAACTTACAATTGTTACATCAGATATGATGTTTACCCTTTCTATCGCCCCAGTAATGCTCCAACACCACAAGATCTCATTCCAGCTTCCAATATTATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCTCACAATTGTTCAAGCAATGAAACTACGAACAATGATTTTCTATCAAATCTCACAACACTCTTCTCTTCATTATCTTCCAATGCCATCAGAACCAGCTTCTTCAAGACAACTGTCGACACGGTCAATGGGCTCTTCATGTGCCGTGGTGATATCTCCCTCTCCCCTACCCTCTGTCAGTTATGCATTCAAGAAGCAACCAAAAGAATATCCTCAGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGATAAATGCTTACTCCGCTATTCCTATCATTCTCTCCTTTCAGGTATTGATACAAGTGCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCTAACCTGGACCTGCTTCAAAGCTTCGCCACTTGGATACTAGCAAATACTTTATATGAATTGCAGTATATCCAGACAGGGGAGAGTACTATTAAAAACTATGAAACAAGATCGGTAAAATTGAATAATCATCAAACCCTTTACACTCTTGTTCAATGTACGCCAGATTTGTCTGATACAGATTGTAGCACCTGCCTGAGTAACATTTTCGAAAACGAAATTCCTTGGAGTAGTATGGCAAGTCCAGAAGGAAATATTTTATATCCTGGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGCAATGGTGATGAACCAGAGGGGTTTGGGCAAGTTAGTGCTCCTCCAACAACTAAAGATAATGATAAAAGAAGGTCGCGGACGGTGATAGTTGTTGTCTCGATCATCCTTTCAACATTGCTTCTAACTTTTTCCTGCTATTTGCTAAGGAAAAGAGCAAGAAAGAGCGGTCATAAGACCTTAATTCTTAAAGAAAACTTTGGTCATGAAAGTACCACTTTGGAGGGGTTGCAATTCAAAATGGCCATAGTTAGAACAGCAACAGACAACTTTTCACATGAAAACAAGATTGGCGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGACACATAGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCACCGTCGAGTTCAAGaatgaaattttattgataGCCAAGTTACAGCAAAGAAATCTTGTGGTATTAATAGGTTTCTGCCTAGAAGGGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGATACTCAACAACAGAAGTTAACCTGGGATGAACGTTACAAAATTATAGGAGGGACGGCGTTAGGAATTCTTTATTTACATGAATATTCTCGTCTCAAAGTTATACATCGCGATCTCAAACCTAGTAATGTTTTATTAGATGAAAACATGAATCCTAAAATATCAGATTTTGGCATGGCTAGAATTGTTCAAATAGATCAAGATCAAGGACATACAAACAAAATTGCTGGAACATGGGGTTACATGTCCCCAGAGTATGCAATGCTTGGACAATTTTCGGAGAAATCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACtggaaaaagaaatataaatccTTATGAATCACTTCATGTTACCGAAGGCCTCACAAGTTATGTATGGAGACAGTTGAAAAATGAAACTCCATTAATCATATTGGAtccaaaaattgaaaattattctCGTGTTGAAGTTATTAAGTGTATACAGATTGGTTTGCTATGTGTTCAAGAAAATCCAAATGTCAGACCTACAATGGCAACAGTTGTTTCATATCTTAATAGTCACTCACCAGAATTGCCATCTCCAGAAAAACCAGCATTTTTCATACAGAATAGAATGAACGACGAAGTAACAGCACAAATGGAATCAAGTTCTGCCAATAATTTTACATCATTTTCTGTCAACGATATGTCTATAAGTGAATTTTATCCTCGACGGTAG 2760 0.3793 MASFHPVFLFILVCFINFAITNAQNDNIISVSCSTINKTTPNSPFQLNLKTLLTDLSSNATANKEFYNTIVEGKNHSSDTVYGQFMCKGDVPAHLCSQCVTNLTRYNLSSNPLNYDCSFSKEVVIQYDETHECMVRYSNKSFFSPTHFRSLSSSCSSVNVSNQAVFERLVFKTLNVVADETANFSIGIKKYATKEATISEFQHLYFQAQCTPDLSPQDCRKCLNVIITDVLQICKNNNPGVGKSETYNCYIRYDVYPFYRPSNAPTPQDLIPASNIIDSKYSQHPAYLSHNCSSNETTNNDFLSNLTTLFSSLSSNAIRTSFFKTTVDTVNGLFMCRGDISLSPTLCQLCIQEATKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGIDTSAPKFHQFNMANASNLDLLQSFATWILANTLYELQYIQTGESTIKNYETRSVKLNNHQTLYTLVQCTPDLSDTDCSTCLSNIFENEIPWSSMASPEGNILYPGCYMMFGLSQFYSNGDEPEGFGQVSAPPTTKDNDKRRSRTVIVVVSIILSTLLLTFSCYLLRKRARKSGHKTLILKENFGHESTTLEGLQFKMAIVRTATDNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSSSKQGTVEFKNEILLIAKLQQRNLVVLIGFCLEGQEKILIYEYVPNGSLDYFLFDTQQQKLTWDERYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDQGHTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESLHVTEGLTSYVWRQLKNETPLIILDPKIENYSRVEVIKCIQIGLLCVQENPNVRPTMATVVSYLNSHSPELPSPEKPAFFIQNRMNDEVTAQMESSSANNFTSFSVNDMSISEFYPRR 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04643 919 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 281 511 - -
Tsu01g04643 919 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 281 511 - -
Tsu01g04643 919 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Tsu01g04643 919 SMART serkin_6 595 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04643 919 ProSiteProfiles Gnk2-homologous domain profile. 284 384 IPR002902 -
Tsu01g04643 919 Gene3D - 25 142 IPR038408 -
Tsu01g04643 919 Gene3D - 396 503 IPR038408 -
Tsu01g04643 919 Gene3D - 284 383 IPR038408 -
Tsu01g04643 919 Gene3D - 148 258 IPR038408 -
Tsu01g04643 919 Gene3D Transferase(Phosphotransferase) domain 1 671 876 - -
Tsu01g04643 919 Pfam Salt stress response/antifungal 33 139 IPR002902 -
Tsu01g04643 919 Pfam Salt stress response/antifungal 292 380 IPR002902 -
Tsu01g04643 919 Pfam Salt stress response/antifungal 435 498 IPR002902 -
Tsu01g04643 919 Pfam Salt stress response/antifungal 155 255 IPR002902 -
Tsu01g04643 919 ProSiteProfiles Gnk2-homologous domain profile. 148 258 IPR002902 -
Tsu01g04643 919 SUPERFAMILY Protein kinase-like (PK-like) 584 900 IPR011009 -
Tsu01g04643 919 ProSiteProfiles Gnk2-homologous domain profile. 27 142 IPR002902 -
Tsu01g04643 919 Pfam Protein tyrosine and serine/threonine kinase 598 865 IPR001245 GO:0004672|GO:0006468
Tsu01g04643 919 ProSiteProfiles Protein kinase domain profile. 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04643 919 CDD STKc_IRAK 601 866 - -
Tsu01g04643 919 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 519 909 - -
Tsu01g04643 919 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 269 - -
Tsu01g04643 919 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 519 909 - -
Tsu01g04643 919 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 269 - -
Tsu01g04643 919 ProSiteProfiles Gnk2-homologous domain profile. 391 503 IPR002902 -
Tsu01g04643 919 Gene3D Phosphorylase Kinase; domain 1 557 670 - -
Tsu01g04643 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04643 Tsu-Chr1 53819782 53824196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04643 285 918 Receptor kinase-like Gene Family AT4G05200 42.598 1.04e-160 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04643 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04643 - - gmx:100785282 1041.95