Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04642 ATGTCTTGCTTAAATATCAACGAAACCACTCGAAATAACGCCTTCCAGTTGAATCTCAAGACCCTCCTCGCAGATTTATCTTCAAACGCCACTGCTAACAAAGAATTCTACAACACTACAGTAGCAGGCAAAAACCACTCATCTGATACAGTCTATGGGATGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACATACTTGACTCGTTACAATTTATCCTCACAGTCATTGAACTATGCATGTTCCTGGTCCGATGGGATGATGATTCAATACAAGGAGTGCATGGTCCGATATTCCAACAATTCTTTCTTCTCCCCTACTCACTTTAGTTCACGTTATAGTACATGCTCTGCTGTTGATGTTTCCAACCAGGATGTATTCGGGTGTTTAGTTTTCAAAACCTTGAATGGTGTGGCAGATGAGGCAGCATATTTTCCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCTTATGTGTCCAAGATGCAACCAAAAGAATATCCTCAGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGATAAATGCTTACTCCGCTATTCCTATCATTCTCTCCTTTCAGGTATTGATACAAGTGCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCTAACATGAACCTGCTTCAAAGCTTCGCCACTTGGATGCTAGCAAATACTTTATATGAGTTGAAGCATATCCAGACACAGGAGAGTACTATTAAAAACTATGAAACAAGATTGGTAAAATTGAATAATCATCAAACCCTTTACACTCTTGTTCAATGCACACCAGATTTGTCCGGTGGAGATTGCGAAACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGCAATGGTGATGAACCAGAGGCATTTGGGCAAGTTAGTCCTCCTCCAACATCTAAAGATGATGAAAAAAGAAGGTCACAAATGATGATAGTTTCTGTTCCGATCATCCTTTCAACATTGCTTCTAGCTTTTTCCTACTATCTGCTAACAAAAAGAGCAAGGAAGAGCATTTATAAGGCATTAATCCTAAAAGAAAATTTTGGTCATGAAAGTACAACTTTGGAGGGTTTGCAATTCGAAATGGCCGTGATTAGAACAGCAACAGACAACTTTTCGCATGAAAACAAAATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTTCTGATGGACGTCACATTGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATCAACGAGTTCAAGaatgaaattttattgataGCCAAGTTACAACAAAGAAATCTGGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTTATCTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGACACTCGACAACAAAATTTAAGCTGGGATGAACGTTACAAAATTATAGGTGGAATGGCTGTAGGAGTTCTTTATTTGCATGAATATTCTCGTCTCAAAGTTATACATCGTGATCTCAAACCTAGTAATGTTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGTATGGCTAGAATTGTTCAAATAGATCAAGATCGTGGACAGACCAACAAAATTGCTGGAACATGgGGTTACATGTCCCCAGAGTATGCAATGTTTGGACAATTTTCGGAGAAATCGgatatttttagttttggtGTCATTGTTTTAGAGATTATTACtggaaaaagaaatataaatccTTATGAATCACTTCATGTTACTGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAAAATGAAACTCCATTAATCATATTGGAtccaaaaattgaaaattattctCATATGGAAGTTATTAAGTGCATACAGATTGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGGCCTACAATGGCAACGGTTGTTTCATATCTTAAGACTCGTTCACCAGAATTGTCATCTCCACAAGAACCAGCATTTTTCATACATGACAGAATGAATCAAGAAGGAACAGCACAAATGGAATCAAGTTCTaccaataattttatatcattttctgTCAATGATATGTCTATAAGTGAATTTTATCCTCGACGATAG 2208 0.3623 MSCLNINETTRNNAFQLNLKTLLADLSSNATANKEFYNTTVAGKNHSSDTVYGMFMCKGDVPAHLCSQCVTYLTRYNLSSQSLNYACSWSDGMMIQYKECMVRYSNNSFFSPTHFSSRYSTCSAVDVSNQDVFGCLVFKTLNGVADEAAYFPIGVKKYATKEATLCVQDATKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGIDTSAPKFHQFNMANASNMNLLQSFATWMLANTLYELKHIQTQESTIKNYETRLVKLNNHQTLYTLVQCTPDLSGGDCETCLKNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYSNGDEPEAFGQVSPPPTSKDDEKRRSQMMIVSVPIILSTLLLAFSYYLLTKRARKSIYKALILKENFGHESTTLEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSSSKQGINEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYFLFDTRQQNLSWDERYKIIGGMAVGVLYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGQTNKIAGTWGYMSPEYAMFGQFSEKSDIFSFGVIVLEIITGKRNINPYESLHVTEGLTSYVWRQWKNETPLIILDPKIENYSHMEVIKCIQIGLLCVQENPNVRPTMATVVSYLKTRSPELSSPQEPAFFIHDRMNQEGTAQMESSSTNNFISFSVNDMSISEFYPRR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04642 735 ProSiteProfiles Gnk2-homologous domain profile. 207 319 IPR002902 -
Tsu01g04642 735 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 166 327 - -
Tsu01g04642 735 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 164 - -
Tsu01g04642 735 Gene3D - 211 319 IPR038408 -
Tsu01g04642 735 Gene3D - 155 199 IPR038408 -
Tsu01g04642 735 Gene3D - 1 109 IPR038408 -
Tsu01g04642 735 ProSiteProfiles Protein kinase domain profile. 411 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04642 735 CDD STKc_IRAK 417 682 - -
Tsu01g04642 735 Gene3D Phosphorylase Kinase; domain 1 373 486 - -
Tsu01g04642 735 Coils Coil 243 263 - -
Tsu01g04642 735 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 166 327 - -
Tsu01g04642 735 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Tsu01g04642 735 Gene3D Transferase(Phosphotransferase) domain 1 487 694 - -
Tsu01g04642 735 SMART serkin_6 411 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04642 735 Pfam Salt stress response/antifungal 7 106 IPR002902 -
Tsu01g04642 735 Pfam Salt stress response/antifungal 233 314 IPR002902 -
Tsu01g04642 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Tsu01g04642 735 ProSiteProfiles Gnk2-homologous domain profile. 1 109 IPR002902 -
Tsu01g04642 735 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 336 725 - -
Tsu01g04642 735 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 2 164 - -
Tsu01g04642 735 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 336 725 - -
Tsu01g04642 735 Pfam Protein tyrosine and serine/threonine kinase 414 681 IPR001245 GO:0004672|GO:0006468
Tsu01g04642 735 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04642 Tsu-Chr1 53809921 53814283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04642 166 734 Receptor kinase-like Gene Family AT3G45860 44.218 9.54e-154 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04642 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04642 - - gmx:100785282 750.355