Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04641 ATGGCTTCTTTCAAGCCAGTCTTCCTCTTTGCCTTTGTTTGCTTCATCAATCTTGTAACAACTAAAGCAAAGGACAATAGTTTGCTTTGGACTTCTTGTTCAACCATCAACAGAACCACTCTAAATAGCACCTTTGAATTGAAGCTCATGAATCTCCTGTTATATTTATCTTCCAATGCCACTGCCAACAAAGAGTTTTACAACACCACAGTAGTAGCAGGCACAAATCACTCATCTGAGAATATCTATGGTATGTTTATGTGCAAGGGTGATGTCCCTGCTCAACTCTGTAGTCAGTGTGTCACAAACTCAACCCGTCTCATTTTATCCGCAGACTCATTTTGTTACTTGTCCAAAGAATATTTGATTTGGTATGAGGATTGCATGATACGATATTCCAACAACTCATTCTTCTCAACTGCTGACATAAGTTCACCTTCTAGCACTTGCCACCATGTCGACGTGCCCAACCAAGCAATATTCAAGCGTTTAGTTTTCGAAACCTTGAACGGAGTGGCAGACGAGGCAGCCAATTTTTCAACTGGCATCAAGAAGTACGCCACAAAGGAAGCAAATATATCTGAATTTCAGACCCTTTATTTCCAAGCACAGTGCACACCAGACTTGTCACCACGAGATTGTAGGAAATGTCTGAATGTTACCTTAACGGAGATTCAGTCCTGTAACGAAGGAAAAAATGTAATGGTCGGGAACGGTGAAGCTTCCAGTTGTTACATCAGGTATGATGTGTACCCTTTCTATCGCCCCACCAATGCTGCGACACCATCAGAACTCATTCCAGCTTCCAATACAATTGATTCAAAATTCTCACCGCATCCTGCTTATCTTTCCCACAATTGTTCAAGCAATGAAATCGTGAACAACGATTTTCTATCAAATCTCAGAACACTCTTCTCTTCATTGTCTTCCAACGCCATCAGAACCGGTTTCTTCAAGATGTCAGTCAACACAGTCAATGGCCTCTTTATGTGCCGCGGTGATATCTCATTCTCCCCTACCCTCTGTCAGCAATGTGTCCAAGAGGCAACCCAAAGAATATCTTCAGAGTGCCCTACCTCCAAAGAGGCTATAATTTGGTATGACAAATGCTTACTCCACTATTCCTATCATCCTCTCCTTTCGGGTATTAATGCAAGCGCTCCCAAGTTTCACCAATTAAATATGGCCAACGCTTCTGACCTCAACCTGCTGCAAAACTTCACCACTTGGAAACTAGCAGATATTTTATATGAAGTGGAAAATTTGCAGACAGGGGATAGTACTATTAAGAATTTTGAAACAAGATCGGTTAAATTGAATGATCATCAGACCCTTTACACTCTTGTTCAATGTACACCAGATCTGTCTGATGGGGATTGCAGCACCTGCCTAACAAACATATTCCAAAATGAAATTCCATGGTGTTGTTTGGCAAGCCCAGAGGGAAAAATTATGTATCCTAGCTGCTATATGATATTTGGATTGGCCAAATTTTACGATGATGGCGATGAACCACAGGCGTTTGAGCAAGTCAGTCCTCCTCCAACAGTGAAAGTTGGTCATGAAAGTACAACTTTGGAGGGTTTGCAATTCGAAATGACCATAATTAAAAAAGCAACAAACAACTTTTCACTTGAAAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACTCTTTCTGATGGACGACATATAGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATCATCGAGTTCAAGaatgaaattttattgataGCCAAGTTACAGCAAAGAAATCTTGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTGATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGATACTCGACAACAAAAGTTAAGCTGGGCTGAACGTTACAAAATTATAGGAGGGACAGCTCTAGGAATTCTTTATTTGCATGAATATTCTCGTCTCAAAGTTATACACCGTGATCTCAAACCTAGTAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCAGACTTTGGCATGGCTAGAATTGTTGAAATAGATCAAGATCGTGGACATACCAACAAAATTGCAGGAACATGGCAAgatctaaactttttttttctttcattattaCATGAATGCGGTGTGGGCTACATGTCCCCAGAGTATGCAATGCTTGGACAGTTTTCGGAGAAGTCAGATGTTTTTAGTTTCGGTGTCATTGTTTTAGAGATTATTACtggaaaaagaaatataaatccGTATGAATCACATCATGTTACCGAAGGCCTCATAAGTTATGTATGGAGAAAATGGAAAAATGAAATTCCATTGATCATATTGGATCCAAAACTAGAAAATTATTCTCATATTGAAGTTATTAAGTGCATACAGATTGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGACCTACAATGGCAGCAGTTGTTTCATATCTCAACAGTCATTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATCCACAATAGAATGAATCAAGAAGTAACAGCACAAATGGAATCAAGTTCTtccaataattttatatcattatCTGTCAATGAGTTATCTATAAGTGAATTTTATCCTCGACAGTAG 2652 0.382 MASFKPVFLFAFVCFINLVTTKAKDNSLLWTSCSTINRTTLNSTFELKLMNLLLYLSSNATANKEFYNTTVVAGTNHSSENIYGMFMCKGDVPAQLCSQCVTNSTRLILSADSFCYLSKEYLIWYEDCMIRYSNNSFFSTADISSPSSTCHHVDVPNQAIFKRLVFETLNGVADEAANFSTGIKKYATKEANISEFQTLYFQAQCTPDLSPRDCRKCLNVTLTEIQSCNEGKNVMVGNGEASSCYIRYDVYPFYRPTNAATPSELIPASNTIDSKFSPHPAYLSHNCSSNEIVNNDFLSNLRTLFSSLSSNAIRTGFFKMSVNTVNGLFMCRGDISFSPTLCQQCVQEATQRISSECPTSKEAIIWYDKCLLHYSYHPLLSGINASAPKFHQLNMANASDLNLLQNFTTWKLADILYEVENLQTGDSTIKNFETRSVKLNDHQTLYTLVQCTPDLSDGDCSTCLTNIFQNEIPWCCLASPEGKIMYPSCYMIFGLAKFYDDGDEPQAFEQVSPPPTVKVGHESTTLEGLQFEMTIIKKATNNFSLENKIGKGGFGEVYKGTLSDGRHIAVKRLSSSSKQGIIEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYFLFDTRQQKLSWAERYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVEIDQDRGHTNKIAGTWQDLNFFFLSLLHECGVGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESHHVTEGLISYVWRKWKNEIPLIILDPKLENYSHIEVIKCIQIGLLCVQENPNVRPTMAAVVSYLNSHSPELPSPQEPAFFIHNRMNQEVTAQMESSSSNNFISLSVNELSISEFYPRQ 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04641 883 SUPERFAMILY Protein kinase-like (PK-like) 532 861 IPR011009 -
Tsu01g04641 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Tsu01g04641 883 Gene3D - 280 378 IPR038408 -
Tsu01g04641 883 Gene3D - 25 137 IPR038408 -
Tsu01g04641 883 Gene3D - 144 253 IPR038408 -
Tsu01g04641 883 Gene3D - 393 498 IPR038408 -
Tsu01g04641 883 Pfam Protein tyrosine and serine/threonine kinase 544 828 IPR001245 GO:0004672|GO:0006468
Tsu01g04641 883 Gene3D Phosphorylase Kinase; domain 1 515 618 - -
Tsu01g04641 883 Gene3D Transferase(Phosphotransferase) domain 1 619 840 - -
Tsu01g04641 883 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 520 873 - -
Tsu01g04641 883 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 280 505 - -
Tsu01g04641 883 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 18 266 - -
Tsu01g04641 883 ProSiteProfiles Gnk2-homologous domain profile. 279 379 IPR002902 -
Tsu01g04641 883 SMART serkin_6 543 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04641 883 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 280 505 - -
Tsu01g04641 883 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 520 873 - -
Tsu01g04641 883 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 266 - -
Tsu01g04641 883 ProSiteProfiles Gnk2-homologous domain profile. 143 253 IPR002902 -
Tsu01g04641 883 ProSiteProfiles Gnk2-homologous domain profile. 389 498 IPR002902 -
Tsu01g04641 883 ProSiteProfiles Gnk2-homologous domain profile. 26 137 IPR002902 -
Tsu01g04641 883 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Tsu01g04641 883 CDD STKc_IRAK 549 830 - -
Tsu01g04641 883 Pfam Salt stress response/antifungal 161 250 IPR002902 -
Tsu01g04641 883 Pfam Salt stress response/antifungal 287 375 IPR002902 -
Tsu01g04641 883 Pfam Salt stress response/antifungal 427 493 IPR002902 -
Tsu01g04641 883 Pfam Salt stress response/antifungal 33 134 IPR002902 -
Tsu01g04641 883 ProSiteProfiles Protein kinase domain profile. 543 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04641 Tsu-Chr1 53803210 53806837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04641 282 882 Receptor kinase-like Gene Family AT3G45860 40.713 9.05e-146 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04641 PK_Tyr_Ser-Thr 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04641 - - gmx:100785282 1001.5