Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04640 ATGGGTTCGTTCCATTTTCTGATTTTACTTCCAACTTTATTTTCCCTCTTTGTTCATTGTTCTCCTTCTCCCATCATACAAGCTGCAATTGATACTCCTACGCATGCTTACTATAACTGCACAAGGAACAGCACTTCTGCAACCGATAACACTTACCATTCCAACATCAAAACACTCTTAGATTGGCTCTCCTCCAATAGCAGTAACAATGCTAGATACTACAATACCACAGTTGCTAGCCAAAACACCATGGACACTGTCTATGGTCTCTTCCATTGTATTAGCGACATTGACCTCAAAATCTGTCAGTCGTGTGTAATAGAAGCAGCCAAACTCATATCATCACTGTGCACCACAGCAAAAGAAGCCATAATTTGGTACAAAGCATGCTGTGTGCACTATTCTGACCATCTCTTCTTTTCCACCGTGGAGAAAAGTCCTGAAATTTCTTTCATGAACGATAAGGATTATGTAGGTGACATTGGGAGCTTCAACAACATTCTGTGGGATATGTTGAACGACATGAGAAGAGAGACGGGAAATTCTTCTGCGAAATTGGCCAGCAAGTCAGTGAACCTCACAGAAAACCAAAAACTATATGGCTACGCTTTTTGCCTCCCATACCTATCTGCAGAGAATTGCAGCTGGTGTCTTAGTGATGCCATAGCAGAAGTTCCAACCAGCTGCTGCAGAGGAAAATCTGGAGGCACAATATTATACCCTAGTTGTGGTGTTAGATTTGAATTATATCCATTCAACAAAGCACACAAGAATGTTACTTGGGTGCTGCCTCCACCCACAAGTCCTAGCCCTTCAGCTCCACCAGGAAAAGGAAAACAGAAGACACTAACAATATTTGAGATCGTTGTTCCAATTGTTGTCTCACTGGTGTTTTTAGTCTTGGGATGTTGTTTCTTTCTAcatagaaaagaaagaaagaatcagCATGATATTCTCAAAGAAAGCTTTGGGAATGAAAGTACCACTTTGGAGTCCTTGCAATTTGAATTTGCCAAAATTGAAGCAGCAACAAACAGATTTGCTGCAGAAAACAGGATAGGCAAAGGTGGATTTGGAGAAGTCTACAAGGGAATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCTGGACAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAGCTTCAACACAGAAACCTAGTGAGATTACTAGGATTTTGTttggaagatgaagaaaagataCTTATCTATGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCCCCAGAAGCGAAAACTATTATCCTGGTCTCAACGTCAGAATATCATCAAAGGAGTTGCCCGTGGAATTCTTTATCTCCATGAAGATTCTCGTCTCAAAATAATACATCGTGATCTGAAACCTAGCAATGTCTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGAATTGTATCAATAGATCAAATTGAAGAAAGTACATGCACGATTGTAGGGACATATGGTTATATATCTCCAGAATATGCAATGCACGGATACTTTTCTGTAAAATCCGATGTGTATAGTTTCGGAATCATGGTTCTAGAGATTATTAGCGGAAAGAGGAAAGGTTGTTCTGCAGAATTAGAGCGTGTGGATGACATCCGGAGATATGCTTGGATAAAATGGGCAGAGCAAACACCCCTTGAACTAATGGATCCTAATATAGAAGGAAGTTATTCCCAAGAAGAAGTCATCAAGTACATCCACATTGGTTTGTTATGTGTTCAGGAAAATCCAGATGACAGACCTACAATGGCAACAATTGCATTCTACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCTTGAACCACCGTATTTTAAGCGTAGTGGAATCGAAGAAAACATGGTCTCCAACAATGCATTGGATAGTAACAGTATCAGTGATTCAATCAACGGACTCTCTGTTACTAAGTTCTTTCCTCGTTAA 2010 0.3905 MGSFHFLILLPTLFSLFVHCSPSPIIQAAIDTPTHAYYNCTRNSTSATDNTYHSNIKTLLDWLSSNSSNNARYYNTTVASQNTMDTVYGLFHCISDIDLKICQSCVIEAAKLISSLCTTAKEAIIWYKACCVHYSDHLFFSTVEKSPEISFMNDKDYVGDIGSFNNILWDMLNDMRRETGNSSAKLASKSVNLTENQKLYGYAFCLPYLSAENCSWCLSDAIAEVPTSCCRGKSGGTILYPSCGVRFELYPFNKAHKNVTWVLPPPTSPSPSAPPGKGKQKTLTIFEIVVPIVVSLVFLVLGCCFFLHRKERKNQHDILKESFGNESTTLESLQFEFAKIEAATNRFAAENRIGKGGFGEVYKGILSDGQEIAVKRLTRSSGQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLFDPQKRKLLSWSQRQNIIKGVARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVSIDQIEESTCTIVGTYGYISPEYAMHGYFSVKSDVYSFGIMVLEIISGKRKGCSAELERVDDIRRYAWIKWAEQTPLELMDPNIEGSYSQEEVIKYIHIGLLCVQENPDDRPTMATIAFYLNSPSINLPSPLEPPYFKRSGIEENMVSNNALDSNSISDSINGLSVTKFFPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04640 669 SMART serkin_6 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04640 669 Gene3D Transferase(Phosphotransferase) domain 1 423 624 - -
Tsu01g04640 669 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Tsu01g04640 669 CDD STKc_IRAK 353 619 - -
Tsu01g04640 669 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Tsu01g04640 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 669 - -
Tsu01g04640 669 SUPERFAMILY Protein kinase-like (PK-like) 331 636 IPR011009 -
Tsu01g04640 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Tsu01g04640 669 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04640 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 669 - -
Tsu01g04640 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Tsu01g04640 669 Gene3D Phosphorylase Kinase; domain 1 307 422 - -
Tsu01g04640 669 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Tsu01g04640 669 Pfam Salt stress response/antifungal 162 250 IPR002902 -
Tsu01g04640 669 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04640 669 Gene3D - 148 252 IPR038408 -
Tsu01g04640 669 Gene3D - 33 139 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04640 Tsu-Chr1 53793988 53800533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04640 12 669 Receptor kinase-like Gene Family AT4G05200 43.070 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04640 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04640 - - mtr:MTR_1g105585 1008.44