Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04638 ATGCATTACTCACTGCTACTCCCAATTCTCATCATAACCCTCACATTATTCTTCAACCATTATTACAACACCACAGTTTCTGCGAATATATATTACTCACCACTGCCTTATCATGAATGTTCAACCAACAACAACTCACCAAACAGCACATACCATATCAACCTTAAAACTCTTTTGTCATGGCTTTCATCCAATGCCACACCTACTACTCATGTATACAACACTACCATTACAGAATCCAACACCAACAACACTATCTATGGCCTCTTCACGTGCGAAATCAAAGACAACGATCCTAACTGTAAAAACTGCATTACAAATGCAGCCAAACAGATAGCAGAACTTTGTCCAATGTCAAAAGAAGCCATAATATATGCTGCTTATTGCATGGTTCGTTATTCTAATCGTTATTTCTTTGCCACAGTGGAAGAGAGTCCTAAACTACACTTCATGAACGAGAACTATGCCGGGCCACAGGTTAGTCGATTCAACAAAATACTTTGGGATACAATGAATGATATCAGAAATTTAACAGCAAATGTTCCTAATGGATCCTTGAAGTATGCTTATAAACCAGTTAACATCCCAGATAACCAAATGCTGTATGCAATGGGAAATTGCATTCCATACCTTTCTTCATATGACTGTAGTCGGTGTCTCGGTGATGCCATAGCAGAAATTCGAACATCTTGTTGTAAAGGAAAAACTGGAGGCAGAATTTACTTCCCTAGTTGTGCAATAAGATTCCAACTTTATCCATTTTTCGATCCACCAGCTTCGACGACAACCCAGCCGCCGCAACAATCCACTGCAACAGTTCCTCTTAGCACCTTGGCATCATCAGGAGGAAAAAGGGAAAAGTCAATTATATCAGTGCTAGTTGTGGTTTTCCCGGTTGTTGTGACAGTGGTGCTTTTATGTTTGGGTTGCAGCTGTTTTATAAGAAGGATACAGAGAAAGAATCAGGAGACTATTCTCAAAGAAAGCTTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGCGAAATCGAATCTGCAACAAACAAGTTTGCTAAAGAAAATATGATCGGAGAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTAGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCGAGAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTCTTGATGAACAGGAAAAGATACTCATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGATCCCCTAAAGAGAAGACAATTAGGTTGGCATGAAAAGCACAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTTCATGAGGATTCATGCCTTAAAATTATGGGTTCCTTCCATTTTCTGATTTTACTTCCAACTTTATTTTCCCTCTTTGTTCATTGTTCTCCTTCTCCCATCATACAAGCTGCAATTGATCCTGTTACGCATGCTTACTATAACTGCACAAGGAACAGCACTTCAGCAACCGATAACGCTTACCGTTCCAACATCAAAACACTCCTAGATTGGCTCTCCACCAATAGCAGTAACGATGCCAGATACTACAATACCGCAGTTGCTAGCCAAAACACCACGGACACTGTCTACGGTCTCTTCCTTTGTGTTAGAGACATTGACCTTAAAATCTGTCAGTTATGTGTAACAGAAGCAGCCCAACTCATATCATCACTGTGCACCACAGCAAAAGAAGCCATAATTTGGTACAAAGTATGCTATGTGCACTATTCTGATCGTCACTTCATTTCCACCGTGGAGAAAAGTCCTGAAATTTCTTTCATGAACGATAAGGATTATGTAGGTGACATTGGGCGCTTCAACAATGTTCTGTGGGATATGTTGAACGATTTGAGAAGAGAGACGAGAAATACTTCTGCTAAGTTGGCCAACAAGTCAGCGAACCTCACAGGAAACCAAACACTATATGGCTACGCTTGGTGCCTCCCATACCTATCTGCAGAGAATTGCAGCTGGTGTCTTAGTGATGCCATAGCAGAAGTTCCAACCAACTGCTGCGGACGAAAATCTGGAGGCACAATATTATACCCTAGTTGTGGTGTTAGATTCGAATTATATCCATTCCACAAAGCACACAGTAATATTGCTTGGGTGCTGCTTCCACCCACAAGTCCTGGCCCTTCGGCTCCACCAgTTGGGGATGATGTTGTTATTTTGGAATCCTTGAGGTTTGGTTTAGGCGAAATCGAATCTGCAACAAACAATTTTGCTAAAGAAAATATGATTGGAGAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTAGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCAAAAGAATTTAAGAACGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTAAAATTACAAGGATTTTATCTTGATGAACAGGAAAAGATACTCATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGAGCCCCTAAAGAGAAGACAATTAAGTTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTTCATGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATGTTTTGCTAGACAGTAACATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGCAACCGATAATATTGAAGAAAATACACACAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTACGCAATGCATGGCCAATTTTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTACTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTTGATATACGGAAATATGCTTGGACAAATTGGAGAAACCAAACGGCATTGGAACTATTGGATCCTCAGATGGAAGGATCATTGTTTCAAAACGATATCATAAGGTGCATCCATATTGCATTATTATGTGTACAGGAAGACCCCAATGATAGACCCACAATGGCCAAAGTTGTTTGTTTCCTCAACAATCCTTCAGCGGAGTTGCCATTACTTACCGAACAATCATTTTTCATGAAAAGAACAATGCAGGACAATATGGTCAGAAAGGGATTGGACTCTATGGGTTATTCAAATCATGAATTGACAGTGAGCGAAATTTACCCTCGATAG 3282 0.3964 MHYSLLLPILIITLTLFFNHYYNTTVSANIYYSPLPYHECSTNNNSPNSTYHINLKTLLSWLSSNATPTTHVYNTTITESNTNNTIYGLFTCEIKDNDPNCKNCITNAAKQIAELCPMSKEAIIYAAYCMVRYSNRYFFATVEESPKLHFMNENYAGPQVSRFNKILWDTMNDIRNLTANVPNGSLKYAYKPVNIPDNQMLYAMGNCIPYLSSYDCSRCLGDAIAEIRTSCCKGKTGGRIYFPSCAIRFQLYPFFDPPASTTTQPPQQSTATVPLSTLASSGGKREKSIISVLVVVFPVVVTVVLLCLGCSCFIRRIQRKNQETILKESFGDDVAILESLRFGLGEIESATNKFAKENMIGEGGFGEVYKGVLSNGEEVAVKRLLGSSKQGAREFKNEVLVIARLQHKNLVKLQGFCLDEQEKILIYEYVPNKSLDYFLFDPLKRRQLGWHEKHKIIGGIARGILYLHEDSCLKIMGSFHFLILLPTLFSLFVHCSPSPIIQAAIDPVTHAYYNCTRNSTSATDNAYRSNIKTLLDWLSTNSSNDARYYNTAVASQNTTDTVYGLFLCVRDIDLKICQLCVTEAAQLISSLCTTAKEAIIWYKVCYVHYSDRHFISTVEKSPEISFMNDKDYVGDIGRFNNVLWDMLNDLRRETRNTSAKLANKSANLTGNQTLYGYAWCLPYLSAENCSWCLSDAIAEVPTNCCGRKSGGTILYPSCGVRFELYPFHKAHSNIAWVLLPPTSPGPSAPPVGDDVVILESLRFGLGEIESATNNFAKENMIGEGGFGEVYKGVLSNGEEVAVKRLLGSSKQGAKEFKNEVLVIARLQHKNLVKLQGFYLDEQEKILIYEYVPNKSLDYFLFEPLKRRQLSWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMDPKISDFGMARIVATDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTNWRNQTALELLDPQMEGSLFQNDIIRCIHIALLCVQEDPNDRPTMAKVVCFLNNPSAELPLLTEQSFFMKRTMQDNMVRKGLDSMGYSNHELTVSEIYPR 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04638 1093 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Tsu01g04638 1093 Pfam Salt stress response/antifungal 637 725 IPR002902 -
Tsu01g04638 1093 Pfam Salt stress response/antifungal 515 611 IPR002902 -
Tsu01g04638 1093 Pfam Salt stress response/antifungal 154 251 IPR002902 -
Tsu01g04638 1093 ProSiteProfiles Protein kinase domain profile. 775 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04638 1093 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Tsu01g04638 1093 Pfam Protein tyrosine and serine/threonine kinase 357 473 IPR001245 GO:0004672|GO:0006468
Tsu01g04638 1093 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 485 744 - -
Tsu01g04638 1093 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 476 - -
Tsu01g04638 1093 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 753 1093 - -
Tsu01g04638 1093 Gene3D Transferase(Phosphotransferase) domain 1 851 1057 - -
Tsu01g04638 1093 ProSiteProfiles Protein kinase domain profile. 354 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04638 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Tsu01g04638 1093 ProSiteProfiles Gnk2-homologous domain profile. 509 614 IPR002902 -
Tsu01g04638 1093 SUPERFAMILY Protein kinase-like (PK-like) 761 1065 IPR011009 -
Tsu01g04638 1093 ProSiteProfiles Gnk2-homologous domain profile. 620 727 IPR002902 -
Tsu01g04638 1093 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Tsu01g04638 1093 CDD STKc_IRAK 781 1042 - -
Tsu01g04638 1093 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Tsu01g04638 1093 Gene3D Phosphorylase Kinase; domain 1 753 850 - -
Tsu01g04638 1093 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Tsu01g04638 1093 SUPERFAMILY Protein kinase-like (PK-like) 338 470 IPR011009 -
Tsu01g04638 1093 SMART serkin_6 775 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04638 1093 Coils Coil 647 667 - -
Tsu01g04638 1093 Pfam Protein kinase domain 776 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04638 1093 Gene3D - 623 727 IPR038408 -
Tsu01g04638 1093 Gene3D - 33 138 IPR038408 -
Tsu01g04638 1093 Gene3D - 508 614 IPR038408 -
Tsu01g04638 1093 Gene3D - 147 254 IPR038408 -
Tsu01g04638 1093 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 485 744 - -
Tsu01g04638 1093 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 476 - -
Tsu01g04638 1093 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 753 1093 - -
Tsu01g04638 1093 Gene3D Transferase(Phosphotransferase) domain 1 342 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04638 Tsu-Chr1 53781324 53786670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04638 37 476 Receptor kinase-like Gene Family AT4G05200 43.820 7.47e-104 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04638 Pkinase 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04638 - - gmx:100793219 823.928