Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04633 ATGCCAAACAATGCAACAACGCCGGTGCAGCCAGAAAGTTCAAAGCCAGAGAATGCACCGGTAACAGCGTTGGTGATACCAGAAATTTCAAcattgtcaaagaaattgagtTTGAAGTTGGTTCCAATGCCTATTAGAGGTAAAGATAATTTCTTGGTTGAAGATATAGAATCTTGTGCTAAATTCTATTCTCATCAAACAACGAACAATTTCAATTCCCAATTTCTCAATTCTTTTCACCGTGAACTAACACATCCTCAAGATGCAAATCTTCCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGATGGAAGGACCCTTGCGGATTACAATATCCAGAAGGAGTCTACCCTTCATCTTGTGCTGCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAGACTTTGACTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTCCGTGGTGGTTTTTAA 615 0.4309 MPNNATTPVQPESSKPENAPVTALVIPEISTLSKKLSLKLVPMPIRGKDNFLVEDIESCAKFYSHQTTNNFNSQFLNSFHRELTHPQDANLPKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04633 204 SUPERFAMILY Ubiquitin-like 173 203 IPR029071 -
Tsu01g04633 204 ProSiteProfiles Ubiquitin domain profile. 172 203 IPR000626 GO:0005515
Tsu01g04633 204 SUPERFAMILY Ubiquitin-like 137 168 IPR029071 -
Tsu01g04633 204 SMART ubq_7 137 199 IPR000626 GO:0005515
Tsu01g04633 204 SMART ubq_7 69 136 IPR000626 GO:0005515
Tsu01g04633 204 SUPERFAMILY Ubiquitin-like 93 140 IPR029071 -
Tsu01g04633 204 Gene3D - 171 204 - -
Tsu01g04633 204 Gene3D - 92 140 - -
Tsu01g04633 204 Gene3D - 141 167 - -
Tsu01g04633 204 Pfam Ubiquitin family 140 162 IPR000626 GO:0005515
Tsu01g04633 204 Pfam Ubiquitin family 93 138 IPR000626 GO:0005515
Tsu01g04633 204 Pfam Ubiquitin family 173 201 IPR000626 GO:0005515
Tsu01g04633 204 PANTHER - 174 203 - -
Tsu01g04633 204 PRINTS Ubiquitin signature 117 138 IPR019956 -
Tsu01g04633 204 PRINTS Ubiquitin signature 96 116 IPR019956 -
Tsu01g04633 204 PANTHER UBIQUITIN 140 175 - -
Tsu01g04633 204 PANTHER UBIQUITIN 93 139 - -
Tsu01g04633 204 PANTHER UBIQUITIN 174 203 - -
Tsu01g04633 204 PANTHER - 140 175 - -
Tsu01g04633 204 PANTHER - 93 139 - -
Tsu01g04633 204 ProSiteProfiles Ubiquitin domain profile. 140 164 IPR000626 GO:0005515
Tsu01g04633 204 ProSiteProfiles Ubiquitin domain profile. 93 140 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04633 Tsu-Chr1 53736091 53741488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04633 172 204 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 90.909 1.69e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04633 - K08770 wse:WALSEDRAFT_52959 187.578