Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04627 ATGTTCAGGAACCAGAGATGTTACCATTCCTTTTGTTCTGAATGTGTTGTCAAACAAGTGGCAACAAAAATCCAAGATAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAGGGTTTGTTGGAGCTTGAATCTTGTAGATCATTACTTCCCAAAGCATTGATTGATAGGTGGGATGATGCATTATCTGAGGCTCTTTTACTTACTGTTCCTAAATTTTACTGTCCCTTTAAGGATTGCTCTGCAATGCTGCTTACTGAGAATGAAGGGATGGGAGATGTTAGGGAATCTGAATGCCCTTTTTGTCATAGGCTGTTTTGTGCAAGGTGTTATGTTCCTTGGCATCCTGGGGTTGGTTGTGAGGAGTATCAGAGAATGAATCCGGATGAAAGAGGGAGGGAAGATCTTCTTGTTAGAGAGCTTGCTAATCAGAAACAATGGAAAAGGTGTCCCAGATGCAGGTGCCAGTTTGAGTTTTGCTATGCTTGTGGAGAAAAATGGACATGTAATCATGGTGGGTGCCAAAGAAATTAG 537 0.4134 MFRNQRCYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGLLELESCRSLLPKALIDRWDDALSEALLLTVPKFYCPFKDCSAMLLTENEGMGDVRESECPFCHRLFCARCYVPWHPGVGCEEYQRMNPDERGREDLLVRELANQKQWKRCPRCRCQFEFCYACGEKWTCNHGGCQRN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04627 178 SUPERFAMILY RING/U-box 132 175 - -
Tsu01g04627 178 SUPERFAMILY RING/U-box 2 66 - -
Tsu01g04627 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Tsu01g04627 178 ProSiteProfiles TRIAD supradomain profile. 1 178 IPR044066 -
Tsu01g04627 178 SUPERFAMILY RING/U-box 61 126 - -
Tsu01g04627 178 Pfam IBR domain, a half RING-finger domain 73 121 IPR002867 -
Tsu01g04627 178 SMART ibrneu5 57 121 IPR002867 -
Tsu01g04627 178 ProSitePatterns Zinc finger RING-type signature. 7 16 IPR017907 -
Tsu01g04627 178 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 164 - -
Tsu01g04627 178 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 164 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04627 Tsu-Chr1 53697752 53698700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04627 2 165 C3H Transcription Factor Family AT2G19610 25.532 2.99e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04627 K11975 - qsu:112001859 267.7