Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04626 ATGGcgcaacagcaacaacaacaacaaacaccatcatcttcttcctcactCCTCTGTCTCGACACCGTAGACGATTTTTACTTCTCTGTTGTTTCCGATGATGAAACCGACCCTAACGTCCCTGTTTCCGATGACAAGTACGCTGAAGCATTACAGTTTCAAGAAACCGTGTTAGCCTCTCTCATCACTTCTCAACAAAACCCATCTTCTTCCTCATCCTCCTTACCACCACCGTCATCGTTACCGTTACCGTGCGTTGCTTCTTCTTCTACGTTACCACCGCCATTGCTATGTGTAGCATCTTCATCAAAGACTGTTCCTGTTGACACTATCCACATCGAagatgaatcagatgatgaattGTCTTCCATGATCATTTGTGAGATTTGTGCTGAACCAAAAACAAGTGATGAAATGTTTAGGAATCAACTATGTTACCATTCATTTTGTTCTGAATGTGTTGTCAAACAAGTTGCAACAAAGATTCAAGACAACATAACAAATGTGTCTTGTCCTggtttgaattgtaagggtttgTTAGAGCTTGAAACTTGTAGACCATTGCTTCCTAAAGAATTGATTGATAGATGGGATGATGCATTGTGTGAGGCACTTTTACTATCTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAGAATGAAGGAGGAGGAGAAGATATTAGGGAATCTGAATGTCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGATTATCAGAAATTGAATGCGGATGAAAGAGGGAGGGAGGATCTTCTTGTTAGAGAACTTGCTAATCAGCAGAAATGGAAAAGGTGTCCCAGATGCAGATTCTATGTTGAAAAAAGGGATGGCTGTTTGCATATCACTTGCAGGTGCACATTTGAGTTTTGCTATGCTTGCGGAGATAACTGGACATCTACTCATGGTGGGTGCCAAAGAAATTAG 999 0.3754 MAQQQQQQQTPSSSSSLLCLDTVDDFYFSVVSDDETDPNVPVSDDKYAEALQFQETVLASLITSQQNPSSSSSSLPPPSSLPLPCVASSSTLPPPLLCVASSSKTVPVDTIHIEDESDDELSSMIICEICAEPKTSDEMFRNQLCYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGLLELETCRPLLPKELIDRWDDALCEALLLSVPKFYCPFKDCSAMLLDENEGGGEDIRESECPFCHRLFCARCHVPWHPGIGCEDYQKLNADERGREDLLVRELANQQKWKRCPRCRFYVEKRDGCLHITCRCTFEFCYACGDNWTSTHGGCQRN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04626 332 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Tsu01g04626 332 ProSiteProfiles TRIAD supradomain profile. 123 332 IPR044066 -
Tsu01g04626 332 SUPERFAMILY RING/U-box 271 330 - -
Tsu01g04626 332 SUPERFAMILY RING/U-box 123 204 - -
Tsu01g04626 332 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 38 320 - -
Tsu01g04626 332 Pfam IBR domain, a half RING-finger domain 206 260 IPR002867 -
Tsu01g04626 332 Pfam IBR domain, a half RING-finger domain 279 329 IPR002867 -
Tsu01g04626 332 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 38 320 IPR031127 GO:0004842|GO:0016567
Tsu01g04626 332 Gene3D - 258 332 - -
Tsu01g04626 332 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Tsu01g04626 332 SUPERFAMILY RING/U-box 199 265 - -
Tsu01g04626 332 SMART ibrneu5 270 329 IPR002867 -
Tsu01g04626 332 SMART ibrneu5 195 260 IPR002867 -
Tsu01g04626 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04626 Tsu-Chr1 53693673 53696049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04626 116 319 C3H Transcription Factor Family AT2G19610 29.858 1.11e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04626 K11975 - qsu:112001859 358.607