Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04625 ATGGAGCAACAACAAGACATTATCCCCTATATCTCTGATGATGATTATAACTATGCTGAAGAGTTACAACTCCAACAAACACTTATGGACTCACTCATCACTTCCAATTCTCATTCCCAAAATGCCCCCTCCTCTTCTTCATCTGGACAATGGAAGTTTATCACCAAAGAagaatcttcttcttcaatcatcATTTGTGAGATTTGTGCAGAACCAAAAAATGCTGAGGAGATGTTTAACAATCAGACATGTTACCATTTCTTTTGTTCTGAATGTGTAATCAAACAAGTGGCAACAAAAATCCAAGACAAAATAGCTAAAGTGTCTTGTCCTGGTTTTAATTGCAAGGGTGTGTTGGAGCTTGAATCTTGCAGGTTATTGCTTCCCAGAGAATTGATTGATAAGTGGAATGTTTTATTGTGTGAGTCTCTTTTTGAACCAGTTCCTAAATTCTATTGTCCTTTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAAtgaaggaagagaagaagatATTAGGGAATGTGAGTGTCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGATTATCAGAAATTGAATGTGGATGAGAGAGGGAGTGAAGATCTTCTTGTTAGAGAACTTGCTAATCAGAAACAATGGAGAAGGTGTCCCAAATGCAAATTCTatgttgaaaaaaatgaagGCTGTTTGCATATCACTTGCAGGTGCCGGTTTGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCATGGTGGTTGCCAAACAGATTAG 816 0.3578 MEQQQDIIPYISDDDYNYAEELQLQQTLMDSLITSNSHSQNAPSSSSSGQWKFITKEESSSSIIICEICAEPKNAEEMFNNQTCYHFFCSECVIKQVATKIQDKIAKVSCPGFNCKGVLELESCRLLLPRELIDKWNVLLCESLFEPVPKFYCPFKDCSAMLLDENEGREEDIRECECPFCHRLFCARCHVPWHPGIGCEDYQKLNVDERGSEDLLVRELANQKQWRRCPKCKFYVEKNEGCLHITCRCRFEFCYACGEQWSSTHGGCQTD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04625 271 SMART ibrneu5 209 268 IPR002867 -
Tsu01g04625 271 SMART ibrneu5 134 199 IPR002867 -
Tsu01g04625 271 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 260 IPR031127 GO:0004842|GO:0016567
Tsu01g04625 271 Gene3D - 196 271 - -
Tsu01g04625 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 146 IPR013083 -
Tsu01g04625 271 ProSiteProfiles Zinc finger RING-type profile. 66 111 IPR001841 -
Tsu01g04625 271 ProSiteProfiles TRIAD supradomain profile. 62 271 IPR044066 -
Tsu01g04625 271 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
Tsu01g04625 271 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 260 - -
Tsu01g04625 271 SUPERFAMILY RING/U-box 61 147 - -
Tsu01g04625 271 SUPERFAMILY RING/U-box 210 268 - -
Tsu01g04625 271 SUPERFAMILY RING/U-box 142 204 - -
Tsu01g04625 271 Pfam IBR domain, a half RING-finger domain 151 199 IPR002867 -
Tsu01g04625 271 Pfam IBR domain, a half RING-finger domain 218 268 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04625 Tsu-Chr1 53689806 53690769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04625 66 258 C3H Transcription Factor Family AT2G19610 28.079 7.51e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04625 K11975 - pop:18094363 325.865