Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04622 ATGGAGCAGCAACAAGAGATTGTTCCAAATATCTCTGATGATGAAGACTATGCTCAAGAGTTACAGTTTCAACAAACCCTTGCTGACTCACTCATCACCTCCACACCGTCGCCACCACAACCGTCGCCGTCGTTACTCTCCATAGCGTCTTCTTCATCAAAATCTGTTGATGTTGCCATTGTCCTCAAAGTAGAGCAGTTAAAACTCGATACCAAGGAAGAAGAATCAAAtgaatcatcttcttcttcaatcatcATTTGCGAGATTTGTGCTGAGACAAAAAAGACTGAAGAAATGTTTAACAATCAGAATTGTTCACATTCATTTTGTTCTGAATGTGTTATCAAACAAGTTGAAAcaaaaatcaatgaaaaaataGCAAATGTTTCTTGTCCTGGTTTGAATTGTAAAGGTGTAATTGAGCTTGAATCTTGCATTTCATTGCTTCCTAAAGAATTGATTGATAAATGGAATGATGCATTGTGTGAAGCACTTTTTTGTTCTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAGAATGAAGGAGGAGGAGAAGATATTAGGGAATCTGAGTGTCCTTTTTGTCATAGGTTGTTTTGTGCAAGTTGTCATGTTCCATGGCATCCTGGTATTGGTTGTGAGGATTATCAGAAATTGAATGTAGATGAAAGAGGGAGTGATGATCTTGTTGTTAGAGAGCTTGCTAATGAGAAAAAATGGAGAAGGTGTCCTACATGTAAATTCTATGTTGAAAAAAATGGAGGTTGTTTGCATGTTACTTGCAGGTGCCGGTTTGAGTTTTGTTATGCTTGTGGTGAACAATGGAGTTCTACTCATGGTGGTTGCCAAACAAATTAG 879 0.3618 MEQQQEIVPNISDDEDYAQELQFQQTLADSLITSTPSPPQPSPSLLSIASSSSKSVDVAIVLKVEQLKLDTKEEESNESSSSSIIICEICAETKKTEEMFNNQNCSHSFCSECVIKQVETKINEKIANVSCPGLNCKGVIELESCISLLPKELIDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGGGEDIRESECPFCHRLFCASCHVPWHPGIGCEDYQKLNVDERGSDDLVVRELANEKKWRRCPTCKFYVEKNGGCLHVTCRCRFEFCYACGEQWSSTHGGCQTN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04622 292 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 281 IPR031127 GO:0004842|GO:0016567
Tsu01g04622 292 SUPERFAMILY RING/U-box 82 168 - -
Tsu01g04622 292 Gene3D - 218 292 - -
Tsu01g04622 292 Pfam IBR domain, a half RING-finger domain 161 220 IPR002867 -
Tsu01g04622 292 Pfam IBR domain, a half RING-finger domain 240 289 IPR002867 -
Tsu01g04622 292 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Tsu01g04622 292 SUPERFAMILY RING/U-box 231 290 - -
Tsu01g04622 292 SMART ibrneu5 230 289 IPR002867 -
Tsu01g04622 292 SMART ibrneu5 155 220 IPR002867 -
Tsu01g04622 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 166 IPR013083 -
Tsu01g04622 292 ProSiteProfiles Zinc finger RING-type profile. 87 132 IPR001841 -
Tsu01g04622 292 Pfam Zinc finger, C3HC4 type (RING finger) 87 132 IPR018957 GO:0046872
Tsu01g04622 292 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 281 - -
Tsu01g04622 292 ProSiteProfiles TRIAD supradomain profile. 83 292 IPR044066 -
Tsu01g04622 292 SUPERFAMILY RING/U-box 158 225 - -
Tsu01g04622 292 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04622 Tsu-Chr1 53674050 53675052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04622 87 279 C3H Transcription Factor Family AT2G19610 28.500 8.53e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04622 K11975 - qsu:112001859 318.546