Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04620 ATGGCAGCCGTTGAGGTCGATGCAGCAGCAGCAGCCACCGGAATCCAAAAGAAGAGAACGTTCAAGAAGTTCAGTTACAGAGGTGTTGATTTGGATGCTCTTCTTGACATGCCCACTGCTGAGTTCGTCAACCTCTTCCCTGCTCGTCCTCGTAGAAGCTTTCATAGAGGTCTCGCCAGAAAGCCCATGTCTTTAATCAAAAGGCTTCGCAAAGTGAAAATTGAGGCACCAGCTGGTGAGAAGCCAGAAGCTGTTAGGACACATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGGAAGACATTTAACCAAGTTGAAATCAAACCTGAGATGATTGGACATTACCTTGCTGAGTTCTCAATTTCATACAAGCCAGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 465 0.4559 MAAVEVDAAAAATGIQKKRTFKKFSYRGVDLDALLDMPTAEFVNLFPARPRRSFHRGLARKPMSLIKRLRKVKIEAPAGEKPEAVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04620 154 Gene3D 30s Ribosomal Protein S19; Chain A 11 154 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 Hamap 30S ribosomal protein S19 [rpsS]. 50 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 ProSitePatterns Ribosomal protein S19 signature. 107 131 IPR020934 GO:0003723
Tsu01g04620 154 Pfam Ribosomal protein S19 52 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 8 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PANTHER BNAA03G55820D PROTEIN 8 154 - -
Tsu01g04620 154 TIGRFAM uS19_arch: ribosomal protein uS19 21 154 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tsu01g04620 154 SUPERFAMILY Ribosomal protein S19 57 138 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PRINTS Ribosomal protein S19 family signature 107 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PRINTS Ribosomal protein S19 family signature 87 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g04620 154 PRINTS Ribosomal protein S19 family signature 119 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04620 Tsu-Chr1 53658321 53661301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04620 7 154 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 84.459 1.86e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04620 K02958 - twl:120006978 259.225