Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04619 ATGTCACAACAAAATGCGTTTGATCATCCTCAACCAGCTCAACAACAGCAACAGCAATTTTTGGGCATGTCAAATAACAACACTTCTTCATCAAGTGATTCAGGAAGGaataatcaaaaccaaaattcTGAAAACGAAGTTCTTTCCATGGGAGACCAAGAAGATCtcaatcaacaacaaaaaaagaggAACAACAAGTGGCACACACAAGAGCAAATACACAAAATGGAAGCGTTATTCAACCGGTTTCCTCATGTTGATAGCAATCAAGCGGAACAATTGAGTCTTGAGTTGGGTCTTACGCCTACGCAAATCAAGCAATGGTTCCAAAACAGGCGCAGCCTTGCTAAGGGACATCAAGAGCGTCACCAGAACGATCTTTTAAATGATGAAAATACGAAGCTTCGTGCTGAAAATGAGATGTATAAGGAGGAACTAAAAAACGCTACATGCTCAAAATGTGGAGGTTCAATTTCTACCGGTGAAAGGTCTTGTACTTATAACTACCTTACAACTGAGAATGCTAGATTAAAAGCTGAAATAGAAGGGACTCACGCCATCTTATCTAAATATTCTTCGACGTTTGCACCCGCATTTGAAATAGGAAGTGGTAATGGCCCATTTGGATCACTCTGGATTCCTAATGATTGTGACAACCCAAAGATTATAGAACTTGCTGAGGTTTCAATGGAGGAACTCACAAAGTTGACTTTTGCCGGTTCCCCTTTATGGATCTCTATTAATGACTCTGAGATTCTAAACGAAGATGAATACATTAGAGTTTTCCCTAATGTATTAGGTCCAAAACTCACAAGATTAAAATCAGAATCTTCAAGAGAATCTGTGTTGGTTAATATGAATCATATTAACCTTGTTGAGATCCTCATGGATGTGAATCAATGGTCAACTATGTTTAGTTGCATTGTTTCAAATGCAATGACACTTAAAGTTTTATTGCCCAGTGAGTTAGGAAACTACAATGGAACCGTGCAAGTGATGTCAGCTGATTTTCAGGTTCTTTCACCACTTGTTTCTGCTCGTAAAAATTATTTCGTTAGATATTGTAAGCAACACCGACAAGGGGTGTGGGCAATTGTTGATGTTTCGTTGGATCATCTGCGACCAAATAGTAATGCAACACCAAGAAGTCAAAGACGACCATCTGGTTGTTTAATTCAAGAATTTCCAAATGGTCGCTCAAAGgtTACCTGGATTGAGCATGTAGAAGTGGGCGACAACACAATGTCGCTAAATATTTATAAGTCTCTAATAACTTCTGGTTTTGCCTTTGGAGCTAAGCGATGGGTGACATTATTAGATAGACAATGTGAACGTCTTGCTTATTCAATGATCACAGACATACCTGCAGGAGATCATTGTGTGATGAATAGTTTTCAAGGAAGGAAGAGTTTGTTGGATTTGGCAGAGAGAATGAAAGTGTGTTTTTCTACTGTTGTTGGTTCTTCTATAGCAAGTTGTTGGAATGTGTTAACATCAAATTTTGATGACGTAAGAGTCATGACCAGAACAAGTATTGCTGCACCTGGAACACCTCCTAGTATAGTTGTTAGTGCTGGAACTTCTCTTTGGCTTCCGGTCCTTCCAAGGAGACTTTTCAATTTTCTAGgaaatcaaaattcaagaagTCAGTGGGATATTATTTCTATTGGGGGTATAATTAAAGAAATGGCACACATAACACATGGTCGTGATCTTGACAATTATGTCTCTCTATTTCATATTAATAGTGAAAATTGCTACCAAAATAATATGATTGTGCTTCAAGACAATAGCATTGATAGTACAAGCTCACATGTTATTTATGCTCCAATTGATATCAATGTAGTTTTAAATGGTGGTGATCCAAATTTTCTTACCCTACTTCCCTCTGGTTTTGTTATTCTCCCCGACGGAGTTCAACGGAGCAATGGAGGACCTATGCTTAATGCTATTGGATCTGGAGAGAGACAGTGTAGAGCTCCTGCCGCACACTCACACGCACACGCAACTATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAGGAGCATTTACAATGCTGATAAACTTGGGAAGCGTCAAGTTATGATTAGGCCATCATCAAAAGTCATTATCAAATTCCTCATGGTCATGCAAAAGCATGGATATATTGGGGAGTTCGAATATGTCGATGATCACAGGGCTGGAAAAATTGTTGTTCAATTGAATGGTAGATTGAATAAGTGCGGTGTTATTAGTCCTCGTTTTGACATCGGCGTCAAAGCCGTTGAAGGATGGACTGCAAGGCTTCTTCCCTCAAGACAGTTTGGATATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGCTGGTGGTAAAGTGTTGGGATTTTTCTACTAG 2403 0.3845 MSQQNAFDHPQPAQQQQQQFLGMSNNNTSSSSDSGRNNQNQNSENEVLSMGDQEDLNQQQKKRNNKWHTQEQIHKMEALFNRFPHVDSNQAEQLSLELGLTPTQIKQWFQNRRSLAKGHQERHQNDLLNDENTKLRAENEMYKEELKNATCSKCGGSISTGERSCTYNYLTTENARLKAEIEGTHAILSKYSSTFAPAFEIGSGNGPFGSLWIPNDCDNPKIIELAEVSMEELTKLTFAGSPLWISINDSEILNEDEYIRVFPNVLGPKLTRLKSESSRESVLVNMNHINLVEILMDVNQWSTMFSCIVSNAMTLKVLLPSELGNYNGTVQVMSADFQVLSPLVSARKNYFVRYCKQHRQGVWAIVDVSLDHLRPNSNATPRSQRRPSGCLIQEFPNGRSKVTWIEHVEVGDNTMSLNIYKSLITSGFAFGAKRWVTLLDRQCERLAYSMITDIPAGDHCVMNSFQGRKSLLDLAERMKVCFSTVVGSSIASCWNVLTSNFDDVRVMTRTSIAAPGTPPSIVVSAGTSLWLPVLPRRLFNFLGNQNSRSQWDIISIGGIIKEMAHITHGRDLDNYVSLFHINSENCYQNNMIVLQDNSIDSTSSHVIYAPIDINVVLNGGDPNFLTLLPSGFVILPDGVQRSNGGPMLNAIGSGERQCRAPAAHSHAHATMVRVSVLNDALRSIYNADKLGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVQLNGRLNKCGVISPRFDIGVKAVEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04619 800 Pfam Homeodomain 66 116 IPR001356 GO:0003677
Tsu01g04619 800 Coils Coil 125 152 - -
Tsu01g04619 800 SMART START_1 224 445 IPR002913 GO:0008289
Tsu01g04619 800 Gene3D - 740 800 - -
Tsu01g04619 800 SUPERFAMILY Ribosomal protein S8 674 800 IPR035987 GO:0003735|GO:0005840|GO:0006412
Tsu01g04619 800 MobiDBLite consensus disorder prediction 1 69 - -
Tsu01g04619 800 CDD START_ArGLABRA2_like 220 444 - -
Tsu01g04619 800 CDD homeodomain 62 120 IPR001356 GO:0003677
Tsu01g04619 800 MobiDBLite consensus disorder prediction 1 55 - -
Tsu01g04619 800 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Tsu01g04619 800 ProSiteProfiles START domain profile. 215 448 IPR002913 GO:0008289
Tsu01g04619 800 SUPERFAMILY Bet v1-like 493 639 - -
Tsu01g04619 800 ProSitePatterns Ribosomal protein S8 signature. 770 787 IPR000630 GO:0003735|GO:0005840|GO:0006412
Tsu01g04619 800 SUPERFAMILY Homeodomain-like 61 130 IPR009057 -
Tsu01g04619 800 SMART HOX_1 59 123 IPR001356 GO:0003677
Tsu01g04619 800 Gene3D - 49 133 - -
Tsu01g04619 800 SUPERFAMILY Bet v1-like 217 447 - -
Tsu01g04619 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 191 - -
Tsu01g04619 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 210 650 - -
Tsu01g04619 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 191 IPR042160 -
Tsu01g04619 800 Pfam Ribosomal protein S8 677 800 IPR000630 GO:0003735|GO:0005840|GO:0006412
Tsu01g04619 800 Gene3D - 671 739 - -
Tsu01g04619 800 Pfam START domain 225 445 IPR002913 GO:0008289
Tsu01g04619 800 Gene3D - 269 445 IPR023393 -
Tsu01g04619 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 210 650 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04619 Tsu-Chr1 53644539 53653826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04619 32 638 Homeobox Transcription Factor Family AT4G04890 52.969 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu01g04619 START 1.9e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04619 K09338 - gmx:100782240 677.937