Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04616 ATGCAAGATTTTTTCGGTTCCATTCGCCGATCCATAGTTTTCCCAACTCCACCCTCACACTCCGACGATGGACGACGCTTCACTGGAATCGCCAACAAAATTGGTTCCGCCATTCGCAAATCCAGAATCGGCCTCAAGTCTCCAACTCCTCCTCCTCCACCCATCCGGTGGCGGAAAGGTGAGTTGATCGGTTCTGGTGCCTTCGGTCGTGTCTACATGGGCATGAACCTCGACTCCGGCGAGCTTATTGCAGTCAAACAGGTTTTGATCGAACCTGGTTTTGCTTTCAAAGAGAATACACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTAAAGAATCTTAAGCATCCAAATATTGTTAGATACTTGGGAACTGCTAGAGAGGAAGATTCCTTAAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCGTCGCTATTGGGGAAATTCGGATCCTTTCCTGAGTCCGTTATAAGAATGTATACAAAACAGCTTTTACAGGGGCTTGAATACCTTCACAATAACAGAATTATTCACAGGGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGTGCATCCAGGAAAGTCGTGGAATTGGCTACCATGAATGGAACAAAGTCTATGAAAGGTACCCCACACTGGATGTCACCCGAAGTTATTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGTACTGTGATAGAGATGGCCACAGGAAAACCTCCATGGAGTCAACAGTATCCCCAAGAGgttTCGGCTCTTTTCTACATTGGGACAACTAGATCTCATCCACCCATACCGGAACATCTGTCTACTGAGGCAAAGGACTTTTTGCTAAAATGCTTTCACAAGGAACCAGATCTAAGACCTTCTGCATCAGACTTGTTACTGCATCCTTTCATCACCTGCGAGTATCAGGACTCTCATTCAATATCATGCAGTTCAATCAGGGACTCCTGCAATCAGATGGCAACAAATGGGATGAACTCTAGAAACTTTTTGGATTCTATCCAAGGATCAACATGCACAGGCCTAAAGGATGTCTGTCAGATGGATAGTTTGAGGTTCTCAACTGTATATCATGCAAATCCTCTAAATGCAGGTTCCTACCAAGGAGCAGACAATTATGATGATGACATGTGTCAGATTGATGATAAAGATGATTTCTTTGTTGCTTCATCAGTAAATTCAAAATCCTTACTTGCTGCTGACGACATAAAGAGTTTCAATCCGATGTGCGAACCTTTGGAGGATGACTGGCCTTGCAAGTTTGACGAAACACCAAATTTGAAGAAAAGCAGACTGAACTTGTCTCCGGATCAAACTGTTAGGAAAACTACGAGTCCCGAACCATCTCCTAATGCAGACAATGAGTTCTCATTTTCATGTGAACCTCTTggagttgaagatgatgatgaagtgaCAGAGTTCAAAATTAGAGCTTTCCTGGATGATAAGGCCTTTGAACTGAACAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAAATGCAGCCATTCCTCCTGTGCCTGTTGCAGTTGTACAGAGTAAAGTTATTTCTGATGTCTCAAATGTAACATCAAAAAGCAGGTCTCCTAGTCAAGCTAGACGACGATTTTCAATGGCTAGCATTGCCAATGTTACAAGCCCTGGGactgatagaaaatattttgcGAAGCTTAGTGGCGTGACTGCTCATAGTAGACCTTTGCAGGAAATTCAGCCATCCGGGCTTAATGAATCAAAGGAGGCTCTTCATGAAGCTGCGATGGAATCAATTAGTCTTAGCTCAAGCTTTTCTGAGAGACAAAGGAAATGGAAAGAAGAACTTGCTGAAGAGCTTGAGCGGACGCGAGAGGTGATGCGTCAAACAGGTGGAGGGAAGATAACATCCCCAAAGGATCGCAATTTTCTTAGAGACTGA 1989 0.4243 MQDFFGSIRRSIVFPTPPSHSDDGRRFTGIANKIGSAIRKSRIGLKSPTPPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGFAFKENTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLQGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATMNGTKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSTEAKDFLLKCFHKEPDLRPSASDLLLHPFITCEYQDSHSISCSSIRDSCNQMATNGMNSRNFLDSIQGSTCTGLKDVCQMDSLRFSTVYHANPLNAGSYQGADNYDDDMCQIDDKDDFFVASSVNSKSLLAADDIKSFNPMCEPLEDDWPCKFDETPNLKKSRLNLSPDQTVRKTTSPEPSPNADNEFSFSCEPLGVEDDDEVTEFKIRAFLDDKAFELNKLQTPLYEEFFGKSNAAIPPVPVAVVQSKVISDVSNVTSKSRSPSQARRRFSMASIANVTSPGTDRKYFAKLSGVTAHSRPLQEIQPSGLNESKEALHEAAMESISLSSSFSERQRKWKEELAEELERTREVMRQTGGGKITSPKDRNFLRD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04616 662 CDD STKc_MAPKKK 56 320 - -
Tsu01g04616 662 MobiDBLite consensus disorder prediction 450 478 - -
Tsu01g04616 662 MobiDBLite consensus disorder prediction 638 662 - -
Tsu01g04616 662 Gene3D Transferase(Phosphotransferase) domain 1 56 355 - -
Tsu01g04616 662 PANTHER MAP KINASE KINASE KINASE 40 559 - -
Tsu01g04616 662 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Tsu01g04616 662 ProSiteProfiles Protein kinase domain profile. 57 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04616 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Tsu01g04616 662 SMART serkin_6 57 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04616 662 SUPERFAMILY Protein kinase-like (PK-like) 56 335 IPR011009 -
Tsu01g04616 662 MobiDBLite consensus disorder prediction 450 479 - -
Tsu01g04616 662 Coils Coil 97 117 - -
Tsu01g04616 662 Pfam Protein kinase domain 58 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04616 662 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 40 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04616 Tsu-Chr1 53628913 53635093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04616 1 652 MAP Kinase Kinase Kinase AT3G06030 55.105 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu01g04616 Pkinase 2.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04616 - K20606 gmx:100795863 910.212