Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04612 ATGATATCCATGgatgaagaagagaagaaactaaaccaacaacaacacacCAAAACACTCATTGCTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCTTCTCATCTTCTCAACTCCGTTTCTTCCATCTATCATCACAATAACAATGGCGATGTAGGGAATTCTGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCAGAACAGCGTACAAAATGTGCATCAGGTTTCAAGTTGGAGGAAGCGATGGAAAGCCGTCATCAAAGTCAGATTCGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGAATGATGAGATTGCGCCGTCCATCGTATGGAGTTGGAGATCCATTTGCCATGGATGCTGATGATCGATTAAGGAAGAAACGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCAAATAGAGACTACAAAAAGAAGGTTTTTTGCTGAAGTACTAAATTCTGTCCGCGAGATGCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCCGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAGAAGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCCGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCACCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGGGATTCTAACGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTAGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCCCTCATAGCACATCTTTATGAATACAAAGGTGTGACTGGGCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCGAACTGGATTATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGACGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCATTTCTGAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACATTGGACAATAGCTATAACATCCAACGGAGACTTTTGTTGACTGGTACCCCAATTCAAAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAGCTATTAATCATTCGGCGTCTGCATCAAGTAATTAGGCCCTTCATATTAAGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGTTTGGACAACGGTACTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTCCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGAGGCACTCTACTACGGAAATTTAATGCCCCCGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCTGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAATACAACGTCAACAGCCCAGGACAGACGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGATGTTCGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAACTACAAATCACGTCTCATGGAAGAGCGTGAATTGCCAGATTGGGTATATGCTCCAATTCAAAAGGATGACAAGTCCAAAAATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCTGATACATTGAGTGAATTACAATGGATGAAAGCTATGGAGAATGGGGAGGATATGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACTACCTCTCATCTGACAGCATAGCACGAGCCAGCGATGATACAGGGGCAGTTGACAGCTTATTAGAGTCAAGGACTAAAATTGCCCCCACGGCAAATGAGAGAACGAGTGAAGACAGTTTCCATGTTACTCCTTCCTCAAAGAGATTCAAACCTGACAGAACAAATTTCCAGAAACATGCGCACGAAGATGTCAGTGGAAGTGGTTTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCCTGGCCAGGGTTCAGTATCCGATAGCAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAACTGA 3270 0.4083 MISMDEEEKKLNQQQHTKTLIAALNFLSRDVPLPSHLLNSVSSIYHHNNNGDVGNSGDDLITDLEDALSEQRTKCASGFKLEEAMESRHQSQIRHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPSYGVGDPFAMDADDRLRKKRDSERLSRLEEVEKNQIETTKRRFFAEVLNSVREMQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLYEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWMFEKMDEERRQKENYKSRLMEERELPDWVYAPIQKDDKSKNFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDMSKLSAKGKRRESRDYLSSDSIARASDDTGAVDSLLESRTKIAPTANERTSEDSFHVTPSSKRFKPDRTNFQKHAHEDVSGSGLNQHVFSWNTHKKKRSSHPGQGSVSDSRGQNSNGRANWN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04612 1089 CDD SF2_C_SNF 684 817 - -
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 302 353 - -
Tsu01g04612 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 607 IPR027417 -
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 1070 1089 - -
Tsu01g04612 1089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 857 IPR001650 -
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 967 989 - -
Tsu01g04612 1089 PANTHER ATP-DEPENDENT HELICASE BRM 11 1034 - -
Tsu01g04612 1089 SMART helicmild6 722 806 IPR001650 -
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 1008 1089 - -
Tsu01g04612 1089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 394 560 IPR014001 -
Tsu01g04612 1089 Pfam Snf2-ATP coupling, chromatin remodelling complex 899 959 IPR029295 GO:0042393
Tsu01g04612 1089 Gene3D - 617 837 IPR027417 -
Tsu01g04612 1089 Pfam SNF2-related domain 385 673 IPR000330 GO:0005524|GO:0140658
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 1022 1042 - -
Tsu01g04612 1089 Pfam Helicase conserved C-terminal domain 693 806 IPR001650 -
Tsu01g04612 1089 PANTHER SNF2/RAD54 HELICASE FAMILY 11 1034 - -
Tsu01g04612 1089 MobiDBLite consensus disorder prediction 967 985 - -
Tsu01g04612 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 863 IPR027417 -
Tsu01g04612 1089 SMART ultradead3 378 571 IPR014001 -
Tsu01g04612 1089 Coils Coil 894 917 - -
Tsu01g04612 1089 Gene3D - 373 616 IPR038718 -
Tsu01g04612 1089 SMART SnAC_2 899 959 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04612 Tsu-Chr1 53584014 53593993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04612 689 864 RAD5 or RAD16-like Gene Family AT5G43530 33.708 8.13e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g04612 SNF2_N 4.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04612 - - gmx:100786280 1862.04