Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04604 ATGGTCCATCTAAAACAAATGCTGCAGCACTTCAAAATCTTCACCACTGCTTATGTTTTCCTTTGCACACTAATTATATCCACAAAAACAACTCATGCAGCTACAGACCAATCCTATATTGTACATTACTGTCCAAACACAAACACTTTTTCTCCAAACGCAACCTACCAAACAAACCTCAACAAACTTCTTTCCACTCTTTCATCAAATTCCACCAACAAAAATGGCTTCTACTACACTACCGTTGGTGAAAACAACCCTGGAAACACCGTATACGGTGCCTTTCTCTGCCGTGGAGATCTCACACAAAGCGCATGCAAAGACTGTGTTTCCACAGCATCCAAGCAAATCCTTCAAGACTGTCCTCAATCAAAAGAATCAGTTATTTGGTTAGCTGAATGCATGATACGTTACTCAAACATTTCATTCTTCAACGTAGCTGCAGAAGTTCCTGTGCGTGCTCTCCTGAACATTGGTATTGTGATGGAGCAGAACCAGTTCATGCAACTTTTAGCGGATACAATGAATGGTGCGACAGTAGAGGCAGTAAATGGTGGAGGTGATAAGAAGTTTGGAACCAAAGAAGCAAATTTTTCTAGCTTTCAAACTTTGTATACACTTGCACAGTGTACGCCGGATTTGTCAATGTCAGGATGTGAAAAATGCCTCAAAATAGCAACTAATGAATTACCATCTTGCTGTAATGGAAAACAAGGTGGAAGAGTGCTTATTCCAAGTTGTAATATTAGGTATGAGGTTTATCCGTTTTATCATGAGTTGAATGTGCCCGCTCCAGATGAACCAAGGCCGAATCCACAAGGTACCGTAAATTTTGGAAAAAAATCCCGGAACTCAGTATTGATAATTGTTGCGATTGTAGTTCCTATTGTGGTTTCTTTGCTGCTTACATTGTTTATCTGGTGGATCATATCTGAAAGGAAAAGAAAGTTCGATTCAGTGCCTCAAGAAAGTGTTGAAATCTCCAGAGTAGAATTCTTGCAATTTGATTTTGATACTATCGAAGCGGCCACAAACAACTTCTGTGAAGACAATAAATTGGGGGAAGGAGGATTTGGCGAGGTTTACAAGGGTAAGCTATTTAATGGACAAGATATTGCTGTGAAGAGACTATCAAGAGGTTCTAGTCAAGGCACAGAAGAATTCAAGAATGAGGTGGTTTTGGTAGCTAAACTACAACACAGAAATCTTGTTAGGATTCTTGGTTTTTGCATGGATGGTGAAGAAAAAATGCTCATTTATGAATTCATGCCCAACAAAAGTCTAGACTATTTTCTATTTGATCCTGAAAAAGCATGGCAGATTAATTGGCCAAGACGATACAAGATAATAGAAGGAATTGCGCGGGGAATGCTTTATCTTCATGAAGATTCGCGACTTAGAATCATTCATCGTGACCTTAAAGCTAGTAATATATTATTAGATGAGTATTTAAATCCTAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGTTGATCAAACCCGAGGAATCACAAGGAGAGTTGTTGGAACACTAGGTTACATGTCTCCGGAGTATGCAATGCATGGAGAATTTTCTATCAAAACAGACGTGTATAGCTTTGGTGTCCTTGTTCTTGAAATAATTACCGGAAAGAAGATCACATCCTTCCGCGAATCAGGCTATGCTGAGGACCTCTTGAGCTATgCTTGGAAAAAATGGAATGAAGGGACACCATTGGAGTTACTAGACATGACATTAAGAGATTCATACTCAAGTGTTGAAGTAACAAGATGCATCCATGTTGGGTTATGTTGTATTCAAGATGATCCAAAGCAAAGGCCATCCATGCAGACAATAGTTCTATTGCTAAGTAGCCATTCTGTAACTCTTGAACAACCTCGAAGACCAGCAGGTTATTTTAATAGCAAAACTGATCAAAGCATTTCAAGAATAGATTTTGAGAATTCAAACATGTCTACAAATACAAGTCAATTATCAGCACCAGTTTCTGTTGATGATACATCAATCACTCAAGTGTACCCTCGGTAG 2034 0.3874 MVHLKQMLQHFKIFTTAYVFLCTLIISTKTTHAATDQSYIVHYCPNTNTFSPNATYQTNLNKLLSTLSSNSTNKNGFYYTTVGENNPGNTVYGAFLCRGDLTQSACKDCVSTASKQILQDCPQSKESVIWLAECMIRYSNISFFNVAAEVPVRALLNIGIVMEQNQFMQLLADTMNGATVEAVNGGGDKKFGTKEANFSSFQTLYTLAQCTPDLSMSGCEKCLKIATNELPSCCNGKQGGRVLIPSCNIRYEVYPFYHELNVPAPDEPRPNPQGTVNFGKKSRNSVLIIVAIVVPIVVSLLLTLFIWWIISERKRKFDSVPQESVEISRVEFLQFDFDTIEAATNNFCEDNKLGEGGFGEVYKGKLFNGQDIAVKRLSRGSSQGTEEFKNEVVLVAKLQHRNLVRILGFCMDGEEKMLIYEFMPNKSLDYFLFDPEKAWQINWPRRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDEYLNPKISDFGMARIFGVDQTRGITRRVVGTLGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYAWKKWNEGTPLELLDMTLRDSYSSVEVTRCIHVGLCCIQDDPKQRPSMQTIVLLLSSHSVTLEQPRRPAGYFNSKTDQSISRIDFENSNMSTNTSQLSAPVSVDDTSITQVYPR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04604 677 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Tsu01g04604 677 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Tsu01g04604 677 SUPERFAMILY Protein kinase-like (PK-like) 332 649 IPR011009 -
Tsu01g04604 677 SMART serkin_6 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04604 677 Pfam Salt stress response/antifungal 165 253 IPR002902 -
Tsu01g04604 677 Pfam Salt stress response/antifungal 44 140 IPR002902 -
Tsu01g04604 677 Gene3D Phosphorylase Kinase; domain 1 309 422 - -
Tsu01g04604 677 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Tsu01g04604 677 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Tsu01g04604 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Tsu01g04604 677 Gene3D - 36 143 IPR038408 -
Tsu01g04604 677 Gene3D - 152 256 IPR038408 -
Tsu01g04604 677 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672|GO:0006468
Tsu01g04604 677 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04604 677 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 676 - -
Tsu01g04604 677 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 36 676 - -
Tsu01g04604 677 CDD STKc_IRAK 353 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04604 Tsu-Chr1 53541850 53545296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04604 7 677 Receptor kinase-like Gene Family AT4G05200 50.363 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g04604 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04604 - - cit:102622618 742.265