Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04602 ATGGAGTTTCAGAGACACCAAACTCACTCCCTCTCTGAGAGGAAGGGGCAAAAACGAAAGCTAGACCAAGATTTTCCCGATGAACGACAGATCTCGGCACCGCCGCCAACCGCCGACGAACGTGCCTCACTTCTCGCCGAAGTAGTCAACCAGGTGAACATTCTCGAGTCTACTTTCACATGGAATGAATCCGATCGAGCAGCGGCTAAGCGTGCCACTCATGCTCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTTGAAGGAGGCGCAATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTGAATGATTGTGTTCCGAAGCCATTGCCATTCGAGCACGAGGTTGAGAAAGGAAGTGCTTTCGCGCTAGGACTTCTTGCCGTTAAGCCAGAACACCAGCAGCTAATTGTTGACAGTGGTGCCTTAACACACCTTGTGGATCTTTTAAAGAGGCATACAAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGCAGGGCTGCAGATGCTGTTACTAATCTTGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTGCATTTGCTTGAATTTTCCGATACAAAGGTGCAAAGAGCAGCCGCCGGTGCGTTGAGAACCCTAGCTTTTAAAAATGACGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAGGATGCTGCTATTCATTATGAAGCGGTGGGTGTGATTGGAAATCTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTTTTTGCTGGTGCTTTACAACCAGTTATTGGATTACTCAGCTCCCGCTGCTCTGAAAGTCAGAGGGAAGCGGCGTTGTTACTTGGACAGTTCGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTACGGCCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTGGTCCCACTGCTCAAGCTTCTTGACTCCAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGGGGAGTTCAGAGACTACAGGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACAGCCGTGTGTTGAACCATCTGTTATATCTCATGCGAGTTTCTGAAAGGGGTTTTCAAAGGCGAATTGCTTTGGTTCTTGCGCATCTTTGTTCTGCAGATGATCAAAGaagaatttttattgaacaccATGGTCTTGAGTTGCTTATTGGGCTTCTTCTCTCATCTAGCTCCAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCTCTGTCTCCCATAGATGCCGCTCCTCCTTCCCCAACACCACAGGTCTACTTAGGAGAGCAGTATGTTAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTGCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGAGAGAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACCGGATCAGTTGATGTCACTCCAGATATTGCTCAAGACCTACTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTGAAGAGACTCTGA 1884 0.4459 MEFQRHQTHSLSERKGQKRKLDQDFPDERQISAPPPTADERASLLAEVVNQVNILESTFTWNESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVNDCVPKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHTNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFSDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHSRVLNHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLLSSSSKQQLDGAVALCKLANKASALSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04602 627 SUPERFAMILY ARM repeat 53 411 IPR016024 -
Tsu01g04602 627 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 1 627 - -
Tsu01g04602 627 Gene3D - 417 520 IPR011989 -
Tsu01g04602 627 SUPERFAMILY ARM repeat 433 509 IPR016024 -
Tsu01g04602 627 Gene3D Potassium Channel Kv1.1; Chain A 521 627 IPR011333 -
Tsu01g04602 627 SUPERFAMILY POZ domain 531 626 IPR011333 -
Tsu01g04602 627 SMART arm_5 311 351 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 135 183 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 467 507 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 185 225 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 269 309 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 227 267 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 82 134 IPR000225 GO:0005515
Tsu01g04602 627 SMART arm_5 352 392 IPR000225 GO:0005515
Tsu01g04602 627 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Tsu01g04602 627 SMART BTB_4 539 627 IPR000210 GO:0005515
Tsu01g04602 627 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Tsu01g04602 627 Pfam BTB/POZ domain 532 626 IPR000210 GO:0005515
Tsu01g04602 627 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 627 IPR044282 -
Tsu01g04602 627 MobiDBLite consensus disorder prediction 1 39 - -
Tsu01g04602 627 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Tsu01g04602 627 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Tsu01g04602 627 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Tsu01g04602 627 Gene3D - 52 416 IPR011989 -
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Tsu01g04602 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04602 Tsu-Chr1 53524594 53533955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04602 198 480 U-box Gene Family AT3G46510 26.502 2.51e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu01g04602 BTB 1.1e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04602 - - gmx:100784348 1068.53