Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04588 ATGATAATTATCGACTTGGATTCCATGCAGTCGCGAAATGGTGCGGCCATGCAAGCTCAAAGTAACACAAATTCTATTGAATTAGGCTCAAGCATTGTTGCTGGCACTAATTCATCATGGAAATCACCCTCAGGAGATTTTGCATTTGGACTCTATCCTCTTGTTAGTACTCACTATCTTGTTGGAATTTGGTTTGATAAGATTCCACAGAAAACATTGGTTTGGTCTGCAAATCGCGATGATCCAGCTCGAATCGGTTCAACCATTAATTTCACAGTAAAAGGGGAATTTTTactacaacatgcaaacaaaactTCAGTTCTAATCTACATTGGTACAAATGCAACTTCTGCTATGATGCAAGATGATGGAAATTTCATTTTAACAAACTCTCTTTCAAAAATCATCTGGCAGAGTTTCGATTCACCAACTGATACTATTCTACCAGGCCAAACATTGAACATGGGTCAGATGCTTTTTTCAAATGCCAATGGAACACAAGACTACTCAACTGGTCAGTACAAATTAGAGGTTCAAAAATCCGACGGAAACATAGTTATATCGGCTTTTCGGTTCACAGATCCTGGTTACCGGGATACTAAAACTAATTCTAACACAAGTGTAAGACTTATATTCAACAACAAAACATCTTTTCTTTATGCTGTCAATAGAACACACAACATACTTAATATGACCACGGAAGTGCCTAATCCAGTCGAAAACTACTATCATCGCGCAACGATTAACGACCGAGGAAATTTTCAACAACTGATTTATCTTAAAGAGAGTGGAAAACATTGGACAGTTATATGGCAGGCTATAATACAGCCTTGCACAGTGAATGCTATCTGTGGTGTGTATGGTTTTTGCACTTCACCTGATAACAGCACAGTTAACTGTAGCTGTTTACCTGGTTACACATCTTTTGATCCAAATTTTCCATCCAAAGGTTGTTATCCAAGTGCCGCCGTCGATTTCTGTGCTGCAAATTCCTCTGCGTCAAACTTCACAGTTGAGCAAATTCAAAATGCTGATATACCAAACAACAGATTTTTTGATCTTCAAAGAATGGATTCATCTGATTTGGACAGTTGCAGTAAGGAAGTGATGAATGATTGTTTCTGTATGGCTGCTGTTTTGATTGACTCAGTTTGTTATAAGAAAAGAACACCTCTTTTAAATGCAAGAATAAGCATTCCTGAAACTAGCAATAGAGTAACATTTATTAAAGTTCCTCAAGTTCTTCAAGAGGATAAAAATGATTCGTCTTCTCGAGTTGTttttgcctctcaaattctaatagtttTGATTGTAGCACTGTCAATATGTTCCTTACTTGCTGCTGTGTTTGCAACTGTTGCTATCTATTATCATCCAACATTTTGTTATCTCCTGAAGAAAGAGACACCGCAAAAGCCAAAGCCTGTGGACATCAACCTTAAGGCGTTTTTGTTCCAAGAGTTGAGAGAAGCAACAAATGGATTCAGAAATGAACTCGGTCGTGGAGGTTTTGGCACGGTTTATAGCGGTGTTTTGAACATGGAGGGTGAACAGGTTGAGGTTGCTGTGAAAAAACTTGAAAATGTAGAGGAAAAAGGCGAAAAGGAATTTGTTAATGAAGTTCAAGTAATTGCTATGACACATCACAAGAATCTTGTGAGGTTGTTGGGTTTCTGCAACAAGGGGAATCATCGTCTTCTGGTTTACGAAATGATGAGAAATGGGACAttatcaagtttaatttttgacGAGGGTGATCAAGGTAAACCAAGTTGGGAACAAAGAGCTAAAATTGTTCTTGAAATTGCTAGAGGCTTGATGTATCTGCATGAAGAGTGTGACCCTCAGATTATCCATTGCGACATAAAGCCGCAAAATGTTCTTCTTGACTCAAATTATACTGCAAAAATTGCAGATTTTGGAATGGCAAAACTATTAATGAAAGACAGAACTAGAACAAGTACAAATGTTAGAGGGACAACGGGATATTTGGCACCAGAAAATGGCTCAAAAATAAGGCACATTGAGTTGCATCAAATTGAAGATGGAACAGAAGGTGGTGATGACATGATACTCATAGATTGGGTTCTATATTGGACAAAAGAAGGGAGACTAAGAGACATTGTTAGccatgatgatgatgttgaaggTTTTAATGATTTCAATAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGTCTGTGTCCTAATCCAACTATTAGGCCATCTATTACAAAAGTTTTACAGATGTTGGAAGGAGATTCAGAAGTTGGTGTTCCACCATTGTTTGATGGACAAACTTGGTAA 2310 0.3662 MIIIDLDSMQSRNGAAMQAQSNTNSIELGSSIVAGTNSSWKSPSGDFAFGLYPLVSTHYLVGIWFDKIPQKTLVWSANRDDPARIGSTINFTVKGEFLLQHANKTSVLIYIGTNATSAMMQDDGNFILTNSLSKIIWQSFDSPTDTILPGQTLNMGQMLFSNANGTQDYSTGQYKLEVQKSDGNIVISAFRFTDPGYRDTKTNSNTSVRLIFNNKTSFLYAVNRTHNILNMTTEVPNPVENYYHRATINDRGNFQQLIYLKESGKHWTVIWQAIIQPCTVNAICGVYGFCTSPDNSTVNCSCLPGYTSFDPNFPSKGCYPSAAVDFCAANSSASNFTVEQIQNADIPNNRFFDLQRMDSSDLDSCSKEVMNDCFCMAAVLIDSVCYKKRTPLLNARISIPETSNRVTFIKVPQVLQEDKNDSSSRVVFASQILIVLIVALSICSLLAAVFATVAIYYHPTFCYLLKKETPQKPKPVDINLKAFLFQELREATNGFRNELGRGGFGTVYSGVLNMEGEQVEVAVKKLENVEEKGEKEFVNEVQVIAMTHHKNLVRLLGFCNKGNHRLLVYEMMRNGTLSSLIFDEGDQGKPSWEQRAKIVLEIARGLMYLHEECDPQIIHCDIKPQNVLLDSNYTAKIADFGMAKLLMKDRTRTSTNVRGTTGYLAPENGSKIRHIELHQIEDGTEGGDDMILIDWVLYWTKEGRLRDIVSHDDDVEGFNDFNRFERMTMVGLWCLCPNPTIRPSITKVLQMLEGDSEVGVPPLFDGQTW 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04588 769 Gene3D - 141 235 IPR036426 -
Tsu01g04588 769 Gene3D Phosphorylase Kinase; domain 1 466 571 - -
Tsu01g04588 769 ProSitePatterns Protein kinases ATP-binding region signature. 499 525 IPR017441 GO:0005524
Tsu01g04588 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Tsu01g04588 769 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 188 IPR036426 -
Tsu01g04588 769 SMART serkin_6 493 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04588 769 Coils Coil 512 532 - -
Tsu01g04588 769 Gene3D Transferase(Phosphotransferase) domain 1 572 760 - -
Tsu01g04588 769 ProSiteProfiles Protein kinase domain profile. 493 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04588 769 SUPERFAMILY Protein kinase-like (PK-like) 474 753 IPR011009 -
Tsu01g04588 769 PANTHER SERINE/THREONINE-PROTEIN KINASE 673 765 - -
Tsu01g04588 769 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 667 - -
Tsu01g04588 769 Pfam S-locus glycoprotein domain 239 307 IPR000858 GO:0048544
Tsu01g04588 769 Gene3D - 18 140 IPR036426 -
Tsu01g04588 769 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 673 765 - -
Tsu01g04588 769 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 20 667 - -
Tsu01g04588 769 Pfam Protein kinase domain 497 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04588 769 PIRSF SRK 668 765 IPR024171 GO:0004674
Tsu01g04588 769 PIRSF SRK 8 672 IPR024171 GO:0004674
Tsu01g04588 769 SMART blect_4 31 143 IPR001480 -
Tsu01g04588 769 Pfam D-mannose binding lectin 72 155 IPR001480 -
Tsu01g04588 769 ProSiteProfiles Bulb-type lectin domain profile. 23 141 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04588 Tsu-Chr1 53396090 53398850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04588 479 755 Receptor kinase-like Gene Family AT1G60800 40.468 3.67e-60 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu01g04588 Pkinase 9.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04588 - - aprc:113871840 1087.02