Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04580 ATGAATGTTGCTGCAAGTTTTGATGCAGAGAACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGTAAAGGAGCTTCTAAGACAGTATATAGAGCTTTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAACTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGATTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCACAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTGCCAATAGACACATTAACTTTGTCACTGAGATGTTCACATCTGGAACTCTTAGACAGTATAGACTTAAACATAAAAAAGTTAACATCAGAGCTGTTAAGCATTGGTGCAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCATGATCCTCCTGTGATTCATAGAGATCTTAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTCGCTGCAATTCTCCGCAAATCTAATGCTGTTCATTGTGTTGGAACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAAGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGGAAGATGCCAGAAGCTCTTAACAAAGTAAATGATCCAGAGGTTAAGCAGTTTGTAGAGAAATGCTTAGCAACTGTATCCCTTAGACTTTCAGCTAAGGAACTCTTAGATGACCCTTTTCTCCAAATTGATGATTATGGATATGACTTGAAAGAATTTCAGTATCTAGGAGATTGCTATGAAGTAACACCAGCAACTATACAACCTATGAGTGTGTACACTGATAATCTTGGCGGTTATCAAGATGATTTTGAAACAAATGATTTTGACTTCTTTGAttgtgaagatgatgataatttGGATGAAGTTGACACCTCAATCAAAGGTAGGAAAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGCCGGGTTCGAAATATCTACTTTCCGTTCGACACGGAGACTGATACTGCATTGAGTGTTGCACATGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACAAAATTAGCAAACATGATAGATAATGAAATTGCGACTTTAGTACCAGGATGGAAAAAGGGACCAAAAATAGATGAAATTTCAGAAGCTTCAAGTGCAAGTTTCTGCCTCAATTGTGCTGCAAACAATACCTTAGTTGATTATGTATCATCAAATAATCCATGTGCCAAGAATCTTCAATTCTTTCATTGTTCGAAAAATGGATGTGCAGCAGTTCATGGCCGGTTCGAGGAGATCACATACCAATATGAAGGGTCTGCAAACAGTGCTACAGAAAATGCACCACCAAGTCAATCCAACGGCATTCATTTTGCCGATATTTGCGCTCAGCGAGACGAATGCGAGCCAAATCATGAAGAGTTGAAAGATATACATTGTGACAAATATCAGGAGGTATCAAAACTATCAACCATAAAGGAAGAGGAGAGAAGTGTTAATGTGGATGACCAAAGTGATTTTAATACCAAAAAGCCTCCTACTAGCCCTGCGGCATCAGAATGTTCATTACTCTTGGactatgaaaatgaaataaggcAAGAATTGAGATGGCTCAAAGCAAGGTACCAAATGCAGCTAAGAGAACTTAGAGACCGTCAAATAGGTAGTACTAGACCAAAATCTATGGGCACATCTCCTGAAACTTTAAAATTAGAGCATGGAAAAGATGGATTTCTGAGACTGCCAGCAAAATTGTCACACATGAATATACAAAATAACAATAACTCGTTATTGAGGTATATGGcttataagaaacattttccATTTGATGGTGACAAATACAACACTGTAGCTGACCAAATGATTCCAAATTATGTTAGTGGGATGAGTCAGCCTAGCAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTGGCAGGGGCTTTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCAGTTGATGCAGTTGATGTCTAG 2145 0.373 MNVAASFDAENSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKKVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPEALNKVNDPEVKQFVEKCLATVSLRLSAKELLDDPFLQIDDYGYDLKEFQYLGDCYEVTPATIQPMSVYTDNLGGYQDDFETNDFDFFDCEDDDNLDEVDTSIKGRKRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVAHEMVAELDITDQDVTKLANMIDNEIATLVPGWKKGPKIDEISEASSASFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANSATENAPPSQSNGIHFADICAQRDECEPNHEELKDIHCDKYQEVSKLSTIKEEERSVNVDDQSDFNTKKPPTSPAASECSLLLDYENEIRQELRWLKARYQMQLRELRDRQIGSTRPKSMGTSPETLKLEHGKDGFLRLPAKLSHMNIQNNNNSLLRYMAYKKHFPFDGDKYNTVADQMIPNYVSGMSQPSNSEQMVTAKDFLAGALLPNSLQRATSLPVDAVDV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04580 714 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Tsu01g04580 714 MobiDBLite consensus disorder prediction 541 565 - -
Tsu01g04580 714 CDD STKc_WNK 22 281 - -
Tsu01g04580 714 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Tsu01g04580 714 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 703 - -
Tsu01g04580 714 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04580 714 Coils Coil 579 599 - -
Tsu01g04580 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Tsu01g04580 714 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04580 714 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Tsu01g04580 714 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 358 412 IPR024678 GO:0004674|GO:0005524
Tsu01g04580 714 Gene3D - 355 447 - -
Tsu01g04580 714 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04580 714 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04580 Tsu-Chr1 53328947 53333091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04580 1 480 MAP Kinase Kinase Kinase AT3G22420 59.923 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu01g04580 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04580 K08867 - gmx:100804179 1065.45