Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04577 ATGGAACCGGGTGCGAGAATAGCTAGCCCTTCTGGGGTTGTGGTTAAGAATAGAAGTTCTTCGGGGTGTTTGATTGTTAGAAAGAAAGGGGATGCTTTGGGTGGTGGAGTTGGTGGTGGTTCGAGTTCCCGGAAGCAGTTTGAATCGAAGAAGGTGAGGAAAAAGCCGAAGGTGGATTCTAGTGATTCGGAATCAAGCGGGGAGTTACTTATGCCGTCTGCTAGGCGGATTGGCCCAGAGACCATTCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTAATGTTGGTAGTGGTGAAATTAGTAGGAAGAGGGAGAGAATGGAACAAATTAGGCGTAATGGGGATGGCATGGTTGATGGGAATGGCTTCGAGAGAAGGGATAAGAAAATTAAGTTGgatgtgtttgattttgatgaatacGATGGAGTGGGTGCGGAAAGGATGAGAAGGAGGCAATTTGATAATGATGGGGTTGGTttaggaggaggaggaggaaggtTTATGGGAACAATGCATTCTGGTAGAGGTAGCATTGATAGGGAATTTGAAACTGGTTCAAGCAAACGCATTGTGGATAAGAGAAAAAATTCCTACTATGACAAGGCAAGTGGTTCACATCTTGGAGATAGTGCTGACCATAGTCGgataaagatgaaaaaggatGGAACTCAGCGTCCTCTGCCCTTGATGAAGGAGAAGTTTAACTCTGATGAATCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGTAGGTGGTTCAACAGAACACTATGATCATCGCAAACCAGTAGAAAGCAGACAAAGTTTAAGGGCTGAGGGCACTTCTAAGAGGAATGTTCCAATCCGCCCTTCATCACACTTAGAAACAAAATCTGCCGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACagataacaaaaaaatcattgtcAAGTAAGGAGGACAGTAAGGGTGATGAACAAGATTCAGATGACAATGACACATCAATGAAAGATATTAAAGCTCACAcatcttcaaaaaagataacCTCTGAAAATGAACAGACCCCCGTACATGACAAGCTCCCAACTACAAAATCAAGTGAAGGGAAAATCAGGCGAGGTACTGGCACAGAGAAGCAGAAACTACGAGAACAAATACGTGAGATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGAAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGCGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGATTGAGGATGATCAACTGGCCAAGGCCAAAGGGGAGAGCTCTTCTTTTGCTCCTATCGCTGATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAgatttgaagatgaagaagaagaagcaaagaGTTGATGACGGTGATAGTGTAAAAGAACGGCAGATTAAAAGAATTGCTGGCAAAAGACATCATATGAGTGGGATTGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAatcaatgaaaacaaaattgactGAAAATGCTGTTACCGGTGATAGCTCTAAAAGCCAGAATGCTACAGCTGAAAAATCATTCTCTGAAAGTGATCCTCAGCTCCTACATGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAAGGATTGAATTCAGAATCTGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGAGGAAACGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGCGGTTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTGCCGCAGCCATatcaaaacatatatttagaTTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGAAAAACAAGAGAATTTTGGGAAAATCAGTTTCCATTCAGTAGACGTCGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGATGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAGATGCTCCCCCCAGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAATGGAACTATTGACAAAGAAGACGGTGCAACTGTATATGCCCTACGTACTTGTGACTTATGCGAGAAAAAATATCATGACTCCTGTACTAAGGATATGGGTGCCCTTCTTGCCGACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAGCAATTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACTTGGTGCCTTGTTCGTAGAACAGATGATGATTCTGAGGCAGCTAGTAGGGGAGTCACCCACAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCAGTTGTTGATAGGAGGAGTGGGATCAATATAATCCATAATAGTTTATATAATAGCGGgtCAAACTTCAGTCGTTTGAATTATACTGGCTTTTATACTGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCTGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTTGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCTTACGTGGACAACGGTATTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTATTTCCTGGTATTGATATGTTACAGAAGCTTCTAGCGGAGCAAGGAAAACTTGAGGATGCCGAGCAATTTGAGAATGAAGATGTTTCAATCAAGCCCACTCTGGTCAATAGGTTAGATATCAATTCACCGGCCTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGATTAACAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTGACTGGTAGGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATCATCTGAGGATGCTAGTTCCAATCCAGCCAACAAGATTAATAATGAAAGCAGTGATGCTTCTCAAGATACAGGCAATCCAGGTTTGGCTGGGAGGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATTATCTGATTCTGTTTCAGAAAATCGTACTTGTCCCTCTAATTCTAGTCATGGGGTACACTACTCTATCTACGAAACCTGCCATGCCTTTATCgacaaggaaaataaaatattgatgtCTTCTCCTGTCAATGATCCATCATCCAAATGCCAACTCATCTCACCAAATGACATTTCTACAAATGGTCTTCCATCGGATCATTCGGATTGTCTTGAAATTCCAGCTTCGGGTCAAGCAACTGCATGTTCTGACCTAGGTACGGTAAAAATCCTGGTTGAACCTGTTTCTGATGGGAAACCTCATGCTTTCACTGATATGAATTGTGATTCACCAGAGCTTGACCGAAACCCTGTGTCGGATTCTCGAGTGGCGGATAATGCTTTGTCTTTTAAAGAGTTAGATATGAATGATGCCCATGTTGAGGTACTTGAAGCTGGTCCTTTAGTGAATTCATCTCAGGCGAACAATACCAAAGAGAATAATGAAAGTGAGGATGTCTCTGGTTCTGTTCTTAATCATGCTATCACTGATATGGATTGTGATCCACCAGGACTTGACCAAAATCCTGTGTTGGATTCTCAAGTGGTGGACAATGCTTCGTCTTTGAAAGAGTTCGATATGAATGATGCCCGTGTTGAGGTTCTTGAAGCTGGCCCTTTAGTGAATTCATCTCAGGCGAACAATACCGAAGAGAATAATGAAAATGAGGATGTCTCTGGTTCTGTTCTTAATCTTGCTATCACTGATACAAATAGCGATTCACCAGGACTTGACCAAAATCCTGTGTTGGATTCTCGAGTGGTGGACAATGATCCGTCTCTTAAAGACTTGGATATGAATGATGTCCATGTTGAGGTTCTTGAAGCTGGCCCTTTAGTGGATTCATCTCAAGGGAACAATACTAAAGAGAATAATGAAAATGTAGATGTCTCTGGTTCTGTTCTTAATCATGCTTTCACTGATATGATTAGTAAATCACCGGGGCTCGACCAAAATTCTGTTTTGGATTCTCAAGTGGTGGATAATGCTTTGTCTTTGAAAGTGAATGATATGAATGGTGCCCATGTTGAGGTTCTTGAAGCTAGTCCTTTAGTGAATTCGTCTCCGGGGAACAATACCAAGGAGAGTAATGAAAATGTAGATGTCTCTGGTTCTGTTCTTAATCATGCCGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGAATGGTGAAATTGCATATGAGGGGAAAAAGAATTCACATTTGGACACAGAAGTTGCTTCAAATGAAATGCATTTGGATGAAACTGGCCTAAATGCTTCTAGTGATACTACTGAAACTGATCCAGCATTGAATGGTTGA 4737 0.4074 MEPGARIASPSGVVVKNRSSSGCLIVRKKGDALGGGVGGGSSSRKQFESKKVRKKPKVDSSDSESSGELLMPSARRIGPETIRVCNSLSALERGGNVGSGEISRKRERMEQIRRNGDGMVDGNGFERRDKKIKLDVFDFDEYDGVGAERMRRRQFDNDGVGLGGGGGRFMGTMHSGRGSIDREFETGSSKRIVDKRKNSYYDKASGSHLGDSADHSRIKMKKDGTQRPLPLMKEKFNSDESIRVQGKNGVLKVMVNKKKVGGSTEHYDHRKPVESRQSLRAEGTSKRNVPIRPSSHLETKSAEKQGLLVRPEKKQITKKSLSSKEDSKGDEQDSDDNDTSMKDIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGTGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIEDDQLAKAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRVDDGDSVKERQIKRIAGKRHHMSGIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGDSSKSQNATAEKSFSESDPQLLHGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLANGTIDKEDGATVYALRTCDLCEKKYHDSCTKDMGALLADSNMSGHSFCGKSCKELFEQLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGVTHRVECNSKLAVALTVMDECFLPVVDRRSGINIIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELVLTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLAEQGKLEDAEQFENEDVSIKPTLVNRLDINSPALQDPHGSEDASSNPANKINNESSDASQDTSNQGLTGRTVCSKSHSEEKSSEDASSNPANKINNESSDASQDTGNPGLAGRTVCSKSHSEEKLSDSVSENRTCPSNSSHGVHYSIYETCHAFIDKENKILMSSPVNDPSSKCQLISPNDISTNGLPSDHSDCLEIPASGQATACSDLGTVKILVEPVSDGKPHAFTDMNCDSPELDRNPVSDSRVADNALSFKELDMNDAHVEVLEAGPLVNSSQANNTKENNESEDVSGSVLNHAITDMDCDPPGLDQNPVLDSQVVDNASSLKEFDMNDARVEVLEAGPLVNSSQANNTEENNENEDVSGSVLNLAITDTNSDSPGLDQNPVLDSRVVDNDPSLKDLDMNDVHVEVLEAGPLVDSSQGNNTKENNENVDVSGSVLNHAFTDMISKSPGLDQNSVLDSQVVDNALSLKVNDMNGAHVEVLEASPLVNSSPGNNTKESNENVDVSGSVLNHAGESSLQVRSDLNGEIAYEGKKNSHLDTEVASNEMHLDETGLNASSDTTETDPALNG 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 95 125 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1095 1122 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 259 281 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1352 1371 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 368 386 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1351 1371 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 297 352 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 178 228 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1559 1578 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1540 1555 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 259 386 - -
Tsu01g04577 1578 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1143 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 515 558 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1045 1081 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 481 498 - -
Tsu01g04577 1578 Pfam PHD-finger 708 750 IPR019787 -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1038 1148 - -
Tsu01g04577 1578 PANTHER PHD FINGER FAMILY PROTEIN 1 1143 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1540 1578 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 29 76 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 99 125 - -
Tsu01g04577 1578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 761 IPR013083 -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1279 1299 - -
Tsu01g04577 1578 Pfam Tify domain binding domain 630 680 IPR032308 -
Tsu01g04577 1578 ProSitePatterns Zinc finger PHD-type signature. 708 747 IPR019786 -
Tsu01g04577 1578 SUPERFAMILY FYVE/PHD zinc finger 693 749 IPR011011 -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 473 571 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 173 228 - -
Tsu01g04577 1578 CDD PHD2_CHD_II 708 747 - -
Tsu01g04577 1578 SMART PHD_3 707 748 IPR001965 -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 353 367 - -
Tsu01g04577 1578 MobiDBLite consensus disorder prediction 1280 1299 - -
Tsu01g04577 1578 ProSiteProfiles Zinc finger PHD-type profile. 705 750 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04577 Tsu-Chr1 53309739 53318402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04577 4 1066 PHD Transcription Factor Family AT4G14920 47.901 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g04577 TDBD 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04577 - - mtr:MTR_1g103830 2241.46