LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04565	ATGCCAAGTCTATTCTCTAAACAACTACACCTCTGTTTCTTCAAACTCAAATACCCCACAATTCTCTCCCAACCTAACCCAAAACacactactactactactccATCACAATCACCACCTTACACCTTCCACCATTTCAACACCACCTACAGCCACCACCACGACGAAGCCGAAGACTATTTCTCCGACGACACCACGGAACTTCCACCACCGGACTTCGCTTCCGCCTTCGCATCCCAAAGATTCTTCTTCTCCTCCCCAGGCAGCTCCAAATCCATCACTGAAACAGAATCTCCTCTCAACAACACTCAACCTTGCAACTCATTGATACCAAAAGGAGGTAGTGTAAAGAGGGTACCAAAATACTCTGTAAACCCTTATGATGATTTTCTCTGTTCTATGCAGGAAATGATTCAATCTCAACAACAAGTGTTTGATGTTACTAATGATTGGGATTATCTTCATGAGCTTCTCTTATGCTATCTTGCTCTCAATCCTACACATACTCACAAATATATTGTTCAGGCTTTCACTCACCTCCTTGTTGATATTTTATCTTGCTCCTCCTCTTCATCATTCTCCTCTTCGTCGCAGCCAGCCTCACCACCTTCTCGGAAGCTCAATAGCCAACGCGGGCCCCGTAGTTTCTCAGGGAGGTTACCGTAA	666	0.4354	MPSLFSKQLHLCFFKLKYPTILSQPNPKHTTTTTPSQSPPYTFHHFNTTYSHHHDEAEDYFSDDTTELPPPDFASAFASQRFFFSSPGSSKSITETESPLNNTQPCNSLIPKGGSVKRVPKYSVNPYDDFLCSMQEMIQSQQQVFDVTNDWDYLHELLLCYLALNPTHTHKYIVQAFTHLLVDILSCSSSSSFSSSSQPASPPSRKLNSQRGPRSFSGRLP	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04565	221	Pfam	Transcriptional repressor, ovate	123	184	IPR006458	-
	Tsu01g04565	221	TIGRFAM	A_thal_3678: uncharacterized plant-specific domain TIGR01568	121	185	IPR006458	-
	Tsu01g04565	221	MobiDBLite	consensus disorder prediction	190	215	-	-
	Tsu01g04565	221	MobiDBLite	consensus disorder prediction	190	221	-	-
	Tsu01g04565	221	PANTHER	TRANSCRIPTION REPRESSOR OFP12	1	191	-	-
	Tsu01g04565	221	ProSiteProfiles	OVATE domain profile.	119	183	IPR006458	-
	Tsu01g04565	221	PANTHER	TRANSCRIPTION REPRESSOR OFP7-RELATED	1	191	IPR038933	GO:0045892

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04565	Tsu-Chr1	53246075	53246752	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	OFP	Tsu01g04565		Ovate	1.7e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04565	-		-	mtr:MTR_1g103640	300.441